| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1616 |
|---|
| Symbol | |
|---|
| ID | 1044879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1812518 |
|---|
| End bp | 1813633 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637145016 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
|---|
| Protein accession | NP_743773 |
|---|
| Protein GI | 26988348 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1062] Zn-dependent alcohol dehydrogenases, class III |
|---|
| TIGRFAM ID | [TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.634826 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.536311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATGATCA AGTCCCGTGC TGCCGTAGCC TTCGAAGCCA AGAAACCCCT GGAAATCGTC
GAAGTCGACG TGGCCATGCC AAAGGCCGGT GAAGTGCTGC TGCGCGTGGT CGCCAGCGGT
GTCTGCCACA CCGATGCCTA TACCCTGTCC GGTGCTGACC CGGAAGGTAT CTTCCCGTCG
ATCCTTGGCC ACGAAGGCGG TGCCATCGTC GAAGCGGTAG GCGAGGGGGT GACCTCGCTC
GCCGTGGGTG ACCACGTCAT CCCGCTGTAC ACCCCGGAAT GCGGCAAGTG CAAGTTCTGC
CTCTCGGGCA AGACCAACCT GTGCCAGGCC ATCCGCGCCA CTCAGGGCAA GGGCCTGATG
CCGGACGGCA CCACGCGCTT CTCGTACAAG GGCCAGCAGC TGTTCCACTA CATGGGCACC
TCGACGTTCT CCGAATACAC CGTGCTGCCG GAAATTTCCG TGGCCAAGAT CCAGAAAGAA
GCACCCCTGG AAAAGGTCTG CCTGCTGGGT TGCGGCGTCA CCACCGGTAT CGGCGCGGTG
CTCAACACTG CCAAGGTCAA GCCCGGTGAT ACCGTGGCCA TCTTCGGCCT CGGTGGCATC
GGCCTGTCGG CCGTGATCGG TGCGGTCAAG GCCAAGGCCT CGCGTATCAT CGCCATCGAC
ATCAACCCGG CCAAGTTCGA AATCGCCCGC CAGTTGGGTG CCACCGATTG CGTCAACCCG
AAGGACTACG ATCGCCCGAT CCAGGAAGTG ATCGTCGACC TCACCGATGG TGGCGTGGAC
TTCTCCTTCG AGTGCATCGG CAACGTTCAA CTGATGCGCG CCGCCCTGGA ATGCTGCCAC
AAGGGCTGGG GAGAGTCGGT CATCATCGGT GTGGCCGGTG CCGGCCAGGA AATTTCCACG
CGTCCATTCC AGCTGGTTAC CGGTCGGGTT TGGCGTGGTT CGGCGTTCGG CGGCGTGCGT
GGCCGCAGCG AGCTGCCGAG CTACGTGGAA ATGTCCGAGA AAGGCGAGAT CCCGCTGGAC
ACCTTCATCA CCCACACGAT GGGGCTGGAA GACATCAACA AGGCCTTCGA CCTGATGCAT
GAAGGCAAGA GCATCCGTAG CGTGATCCAC TTCTGA
|
|---|
| Protein sequence | MMIKSRAAVA FEAKKPLEIV EVDVAMPKAG EVLLRVVASG VCHTDAYTLS GADPEGIFPS
ILGHEGGAIV EAVGEGVTSL AVGDHVIPLY TPECGKCKFC LSGKTNLCQA IRATQGKGLM
PDGTTRFSYK GQQLFHYMGT STFSEYTVLP EISVAKIQKE APLEKVCLLG CGVTTGIGAV
LNTAKVKPGD TVAIFGLGGI GLSAVIGAVK AKASRIIAID INPAKFEIAR QLGATDCVNP
KDYDRPIQEV IVDLTDGGVD FSFECIGNVQ LMRAALECCH KGWGESVIIG VAGAGQEIST
RPFQLVTGRV WRGSAFGGVR GRSELPSYVE MSEKGEIPLD TFITHTMGLE DINKAFDLMH
EGKSIRSVIH F
|
|---|
| |