| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1588 |
|---|
| Symbol | |
|---|
| ID | 1045176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1780143 |
|---|
| End bp | 1781339 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637144988 |
|---|
| Product | succinyldiaminopimelate transaminase |
|---|
| Protein accession | NP_743745 |
|---|
| Protein GI | 26988320 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.133702 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.347765 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATG CCTTGACCCA GCTTCAGCCC TATCCGTTCG AAAAGCTTCG CGCCCTGCTG
GGCAGCGTGA AGCCTGCGGC GGACAAACGC GCCATCGCCC TGTCGATCGG TGAGCCGAAG
CACGAATCGC CGGCGTTCGT CGCCCAGGCC ATGGCCGACA ACCTCGACAA GCTGGCGGTT
TACCCCAGCA CCCTTGGTTT GCCAGCCCTG CGCCAGGCCA TCGGCCAGTG GTGCGAACGA
CGCTTTGGCG TGCCCGCCGG CTGGCTGGAC GCTGACCGCC ACATCCTCCC GGTCAACGGC
ACCCGTGAAG CGCTGTTCGC CTTCACCCAG GCCGTGGTCA ACCGCGCCGA TGACGGCCTG
GTGATCAGCC CCAACCCGTT CTACCAGATC TACGAAGGCG CAGCGCTGCT GGCCGGTGCC
ACCCCGCACT ACCTGCCCTG CCTGGAAAAC AACGGTTTCA ACCCGGACTT CGACGCCGTA
CCGGCCGAGG TGTGGAAGCG TTGCCAGATC CTGTTCCTGT GCTCGCCAGG CAACCCTACC
GGTGCGCTGG TGCCGATGAA CACCCTGAAG AAGCTGATTG CCCTGGCTGA CGAACACGAC
TTCGTGATCG CCGCCGACGA GTGCTACAGC GAGCTGTACT TCGACGAGGA TGCGCCACCG
CCAGGCCTGC TGTCGGCATG CGCCGAGCTT GGTCGTAGCG ATTTTGCGCG CTGCGTGGTG
TTCCACAGCC TGTCCAAGCG CTCCAACCTG CCTGGGCTGC GCTCGGGCTT CGTCGCGGGC
GATGCCCAGA TCATCAAGCC GTTTCTGCTG TACCGCACCT ACCACGGCTG CGCGATGCCG
GTGCAAACCC AGCTGGCCAG CATCGCCGCC TGGCAGGACG AGGCGCATGT ACGCGAGAAC
CGCGACCAAT ACCGCGCCAA ATACGATGCC GTGCTGGATA TTCTGCAGCC GGTACTGGAT
GTGCAGCGCC CGGACGGCAG TTTCTACCTG TGGGCCAAGG TACCGGGCGA CGATGCCGAG
TTCACCCGCG ACCTGTTCGA AGCCCAGCAT GTAACCGTGG TACCGGGGTC GTACCTGTCG
CGTGAAGTGG ATGGGGTGAA CCCGGGTGCC GGGCGCGTGC GCATGGCACT GGTTGCACCG
CTGGCCGAAT GCATCGAAGC GGCGGAGCGC ATTCGCGCCT TCCTGCAAAA CCGCTGA
|
|---|
| Protein sequence | MNHALTQLQP YPFEKLRALL GSVKPAADKR AIALSIGEPK HESPAFVAQA MADNLDKLAV
YPSTLGLPAL RQAIGQWCER RFGVPAGWLD ADRHILPVNG TREALFAFTQ AVVNRADDGL
VISPNPFYQI YEGAALLAGA TPHYLPCLEN NGFNPDFDAV PAEVWKRCQI LFLCSPGNPT
GALVPMNTLK KLIALADEHD FVIAADECYS ELYFDEDAPP PGLLSACAEL GRSDFARCVV
FHSLSKRSNL PGLRSGFVAG DAQIIKPFLL YRTYHGCAMP VQTQLASIAA WQDEAHVREN
RDQYRAKYDA VLDILQPVLD VQRPDGSFYL WAKVPGDDAE FTRDLFEAQH VTVVPGSYLS
REVDGVNPGA GRVRMALVAP LAECIEAAER IRAFLQNR
|
|---|
| |