| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1477 |
|---|
| Symbol | recJ |
|---|
| ID | 1045743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1681478 |
|---|
| End bp | 1683187 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637144878 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | NP_743635 |
|---|
| Protein GI | 26988210 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.221142 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.152861 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCG AACCTCGCCC GCTGCCGCCG ACCCTGCCAT TTCTGGGTAA CCTGCCACCC
TTGCTGACCC GCCTTTACGC CGCGCGCGGC GTGCAGAGCG AGGCCGAGCT GGACAAGAGC
CTGGCACGCC TGCTGCCCTA CCAGCAGCTC AAGGGCATCG AGGCCGGTGT GGACCTGCTG
GTCGAAGCCA TCGACCAGCG CCAGCGCATC CTCATCGTCG GCGACTTCGA TGCCGACGGT
GCCACCGCCA GCACCGTCGG GGTGCTGGGC CTGCGCCTGC TGGGTGCGGC CCATGTCGAT
TACCTGGTGC CCAACCGCTT CGAGTATGGC TACGGCCTGA CCCCGGAAAT CGTCGAGGTG
GCGCTGCAGC GCCAGCCGCA GTTGCTGATT ACCGTGGACA ACGGCATTTC CAGTGTCGAC
GGGGTGGCGG CCGCCAAGGC CGCCGGGCTC AAGGTGCTGG TCACCGACCA CCACCTGCCG
GGCGAGCAGT TGCCCGATGC CGATGCCATC ATCAACCCCA ACCAGCCGGG CTGCAGCTTT
CCGAGCAAGT CACTGGCCGG GGTGGGGGTG ATCTTCTATG TGTTGATGGC CCTGCGCGCT
CGCTTGCGCA GCCTTGGGCG CTACGAGGCG CAGCCACAGC CGAACATTGG CGAACTGCTC
GATCTGGTGG CGCTGGGCAG TGTTGCTGAC GTGGTGCCGC TGGATGCCAA CAACCGCATC
CTGGTGCACC AAGGCCTTGA GCGCATCCGC GCCGGCCGCG CCCGGCCCGG CCTCAAGGCC
ATCCTTGAGG TGGCGCGGCG CGATCACCGG CGCATCACTT CGACTGACCT TGGTTTCATC
CTCGGCCCAC GGTTGAATGC CGCCGGGCGC CTGGACGACA TGAGCCTGGG CATCGAATGC
CTGCTGTGCG AGGACGCGGC GCTGGCCCAG GACATGGCCC AGCAGTTGGA TGACCTGAAC
CAGGACCGCA AGTCCATCGA GCAGGGCATG CAGCGCGAAG CCCTGGCCCA ACTCAAGGAC
CTGCCGGTCG AGTCGATGCC GTATGGGTTG TGCCTGTTCG ATGCCGACTG GCACCAGGGC
GTGATCGGTA TTCTGGCTTC GCGCTTGAAG GAGCGTTACC ACCGGCCGAC CATCGCCTTC
GCCGATGCTG GTGATGGCAT GCTCAAAGGC TCGGCGCGTT CGGTGCCGGG CTTCCATATT
CGCGATGCGC TGGATGCCGT GGCCGCGCGC CACCCGCAGC TGATCAGCAA GTTCGGCGGC
CACGCCATGG CTGCCGGGTT GTCGTTGCCA GAGGCTAATT TCTCGGCGTT TGCCGAGGCG
TTCGACGAAG AGGTGCGGCG TCAGCTGCGC GAAGAAGACC TGACTGGCCG CCTGTTGTCC
GACGGCAGCC TGGCGGTAGA GGAGTTCCAC CTCGACCTGG CCAAGGCCCT GCGCCATGCC
GGCCCATGGG GCCAGCACTT CCCTGAGCCG CTGTTCCATG GCGTGTTCCA GTTGGTGGAG
CAGCGTGTGG TTGGCGAACG GCACCTGAAA GTGGTGCTCA AGAGCGAATG TGGCTCGGTG
CGGCTGGATG GCATTGCCTT CGGCATTGAC CGCGAAGTGT GGCCAAACCC GACGGTGCGC
TGGGTGGAGT TGGCGTACAA GCTGGATGTG AACGAGTTTC GCGGTAATGA GAGTGTGCAG
TTGATGATTG CGCATATGGA GCCGCGCTGA
|
|---|
| Protein sequence | MRIEPRPLPP TLPFLGNLPP LLTRLYAARG VQSEAELDKS LARLLPYQQL KGIEAGVDLL
VEAIDQRQRI LIVGDFDADG ATASTVGVLG LRLLGAAHVD YLVPNRFEYG YGLTPEIVEV
ALQRQPQLLI TVDNGISSVD GVAAAKAAGL KVLVTDHHLP GEQLPDADAI INPNQPGCSF
PSKSLAGVGV IFYVLMALRA RLRSLGRYEA QPQPNIGELL DLVALGSVAD VVPLDANNRI
LVHQGLERIR AGRARPGLKA ILEVARRDHR RITSTDLGFI LGPRLNAAGR LDDMSLGIEC
LLCEDAALAQ DMAQQLDDLN QDRKSIEQGM QREALAQLKD LPVESMPYGL CLFDADWHQG
VIGILASRLK ERYHRPTIAF ADAGDGMLKG SARSVPGFHI RDALDAVAAR HPQLISKFGG
HAMAAGLSLP EANFSAFAEA FDEEVRRQLR EEDLTGRLLS DGSLAVEEFH LDLAKALRHA
GPWGQHFPEP LFHGVFQLVE QRVVGERHLK VVLKSECGSV RLDGIAFGID REVWPNPTVR
WVELAYKLDV NEFRGNESVQ LMIAHMEPR
|
|---|
| |