Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1354 |
Symbol | |
ID | 1041948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1543193 |
End bp | 1544437 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144755 |
Product | major facilitator transporter |
Protein accession | NP_743513 |
Protein GI | 26988088 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00928923 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.137177 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCAC TGCTGTATAT CACCCCTCTG CGTGCCTTGC TGTTCGGCCT GACCCTGGCC TTGTTCGAAC TGCTGACCTA CCTGGCCAGC GACGCGGTCA TGCCGGCCAT GCCGGTCGTG GTCAGCGACC TCGACGCCAG CCCCGAATAC ATACCCCATG CCCTCAACCT GTACCTGCTG GGGGGCGTGG TACTGCAATG GCTGATCGGC CCGTTGGCCG ACCGTTATGG ACGGCGCCCG CTGCTGCTGG TCGGTTGTGC ATTCTTTGGC CTGGCCTGCC TGGCTACCTT CTGGGTCCAG GACATCGGCC TGTTCAACCT GTTGCGTCTG TTGCAGGGCA TTGGCCTGGG CTTTGTGGTC ACCGTCAGCT ACCCAGCCCT GAACGAGGCT TTCAGCGAGG CTGATGCTGT ACGCATGATG GCCCTGCTGG CCAACATCGC CTTGCTGTCG CCCCTGCTCG GGCCGCTGGT GGGCACCTTG CTGCTGCAAT GGCTGGACTG GCGCTGGCTG TTCGTGGCAT TCGCCATCGG CGCGGTGCTG ACCTGGCTGC TGCTGTACCG GTTGATGCCG GAAACCCTGG GCGTGGAGCG CCGTGACGGC TCGCGGCTGG CGTTCACGCC GATTCACCTG CTGCCACTGT TGGCGGGCTA TGGCCAGTTG CTGGGCAACC GCCGCTTCGT TGCAGGCAGC GCCGCCCTTG GGTTGGTCGG ATTGCCGCTG ATTGGCTGGA TTGGCCTGTC GCCGGTGCTG CTGATTCACG ATGAGGGGTT GAGTACCCTG GAGTATGCCT TGTGGCAGTT GCCGGTTTTT TGCGGGCTGA TCCTCGGTAA CCTGATCATC AACCGTATTG CCGATCGCTA CCCGCTGCCA GCCCTGGTGC GTGGCGCGCT CTGGCCATAC CTGGCTGGCC TGTGCCTGAT GGTGCTGGCG ACCTGGTACT GGCCGAGCGT GACCAGTGTG GTGGCCGGCA TGTCGCTGTA CGCGCTGGGG TTGGGCGTGG CCAATGCAGT GCTGTACCGC ATGACGCTGT TCTCCAGCGA ACAGAGCAAG GGGCTGGTTT CGGCCATGCT GGGGATGATC ACGATTGCCT TGCTGGGGTT TGGCGGAGCG CTGCTGGCGA TGATTGGCGC CGGTGCCAGC TTGCTGCATT TTGCCCTGGC GGCGGGGGTG GCGGGGGCGT TGGCGCTGTG GCCGCTGTGG TTTGTGGTGG GTGGGCGGCC TGGGGAAGGG GCTGTAGCTC GATAA
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Protein sequence | MKPLLYITPL RALLFGLTLA LFELLTYLAS DAVMPAMPVV VSDLDASPEY IPHALNLYLL GGVVLQWLIG PLADRYGRRP LLLVGCAFFG LACLATFWVQ DIGLFNLLRL LQGIGLGFVV TVSYPALNEA FSEADAVRMM ALLANIALLS PLLGPLVGTL LLQWLDWRWL FVAFAIGAVL TWLLLYRLMP ETLGVERRDG SRLAFTPIHL LPLLAGYGQL LGNRRFVAGS AALGLVGLPL IGWIGLSPVL LIHDEGLSTL EYALWQLPVF CGLILGNLII NRIADRYPLP ALVRGALWPY LAGLCLMVLA TWYWPSVTSV VAGMSLYALG LGVANAVLYR MTLFSSEQSK GLVSAMLGMI TIALLGFGGA LLAMIGAGAS LLHFALAAGV AGALALWPLW FVVGGRPGEG AVAR
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