Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1345 |
Symbol | secA |
ID | 1041726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1532070 |
End bp | 1534805 |
Gene Length | 2736 bp |
Protein Length | 911 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637144746 |
Product | preprotein translocase subunit SecA |
Protein accession | NP_743504 |
Protein GI | 161378135 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.478182 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000123273 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTTGCGC CTTTGTTAAA AAAACTTTTT GGAAGCAAGA ACGAGCGTGA AGTCAAACGC ATGCTCAAGA CGGTGAGTAT CGTCAATGCC TTCGAAGAGA AGATGGTGGC CCTCTCCGAC GAGCAACTGC GGGGCAAGAC TGCAGAGTTC AAGGAACGCC TGGCCAAAGG CGAGACACTG GACCAGTTGC TGCCCGAAGC CTTCGCCGTG GCCCGCGAGG CCGGCAAGCG CGTAATGGGC ATGCGCCATT TCGATGTGCA GCTGATTGGC GGCATGACCC TGCACGAGGG TATGATCGCA GAAATGCGCA CCGGTGAAGG CAAGACCTTG GTCGGTACCT TGGCCGTCTA CCTCAACGCA TTGTCCGGCA AGGGCGTGCA TGTGGTCACC GTCAACGACT ACCTGGCGCG CCGTGACGCC AACTGGATGC GCCCGCTGTA CGAGTTCCTC GGTCTGTCGG TCGGTATCGT CTCGGCCTTC CAGCCGCCGG AAGAAAAGCG CGCCGCCTAT GCAGCCGACA TCACCTACGG CACCAACAAC GAATTCGGGT TCGACTACCT GCGCGACAAC ATGGCGTTCA GCCAGGACGA GAAGTTCCAG CGTGAACTTA ACTTCGCCGT GATCGACGAA GTCGACTCCA TCCTCATCGA CGAAGCGCGT ACCCCGCTGA TCATTTCCGG TCAGGCCGAG GACAGCTCCA AGCTGTACAT CGAGATCAAC CGCCTGATCC CGCGCCTCAC CCAGCACATC GAAGAGGTCG AAGGCCAGGT CACCCAGGAA GGCCACTTCA CCATCGACGA GAAGAGTCGC CAGGTGGAGC TGAACGAAGC CGGTCACCAG TTCATCGAAG AGATGCTGGC CCAGGCGGGC CTGCTGGCTG AAGGCGAGAG CCTGTACTCC GCGCACAACC TGGGCTTGCT GACACACGTC TACGCCGGTC TTCGTGCACA CAAGCTGTTC CACCGCAACG TCGAGTACAT CGTCCAGGAC GGCCAGGTTC TGCTGATCGA CGAACACACC GGCCGTACCA TGCCGGGCCG TCGCCTGTCC GAGGGCCTGC ACCAGGCCAT CGAAGCCAAA GAGAACCTGA ACATCCAGGC CGAGAGCCAG ACCCTGGCTT CGACCACCTT CCAGAACTAC TTCCGCCTGT ACACCAAGCT GTCCGGCATG ACCGGTACCG CCGACACCGA AGCATTCGAG TTCCAGTCGA TCTACGGCCT GAACGTGATG GTCATTCCGC CGAACAAGCC ACTGGCGCGT AAGGACTACA ACGACCTGGT GTACCTGACC GCTGACGAGA AATACGCCGC GATCATCGCC GACATCAAGG AAAGCATGAA GCTGGGCCGG CCGGTGCTGG TAGGTACCGC GACCATTGAA ACTTCCGAGC ACATGTCCAA CCTCCTGAAA AAGGAAGGGA TCGACCACAA GGTGCTCAAC GCCAAGTATC ACGAGAAGGA AGCCGAGATC ATCGCGCAAG CAGGCGCGCC AGGTGCACTG ACCATCGCCA CCAACATGGC TGGCCGTGGT ACCGACATCC TGCTTGGCGG TAACTGGGAA GCCGAAGTGG CAGCCCTGGA AAACCCGACA GCCGAGCAGA TCGCCCAGAT CAAGGCCGAT TGGCAGAAGC GTCACCAGCA AGTGATCGAG ACGGGTGGCC TGCATGTAAT CGCTTCCGAG CGCCACGAAT CGCGCCGTAT CGACAACCAG CTGCGCGGCC GCTCCGGTCG TCAGGGCGAC CCGGGTTCCA GCCGCTTCTA CCTGTCGCTG GAAGACAGCC TGATGCGCAT CTTCGCCTCT GACCGGGTGA AGAACTTCAT GAAGGCACTG GGCATGCAGT CGGGCGAGGC CATCGAGCAC CGCATGGTCA CCAACGCTAT CGAGAAAGCC CAGCGCAAGG TCGAAGGCCG CAACTTCGAC ATTCGTAAGC AATTGCTCGA ATATGACGAC GTCGCCAACG AGCAGCGCAA GGTGATCTAC CACATGCGCA ACAGCCTGCT GGCCGCCGAG AACATTGGCG ACACCATCGT CGAATTCCGC AAGGAAGTAC TGGACGCTAC CATCAGCCAG CACATTCCGC CGCAGTCGCT GCCAGAGCAG TGGGACGTAG CCGGCCTGGA GGCTTCGCTG GCCAGCGATT TCGCCATCAA GTTGCCAATC CGGCAATGGC TCGACGAGGA CGATCACCTC TACGAAGAGA CCCTGCGCGA GAAGCTGCTG AGCGAGATCA CCACGGCCTA CACCGAGAAG GAAGACCAGG CCGGTCTCGA GGCCTTGCGA ACCTTCGAGA AGCAGATTCT GTTGCGCGTA CTGGACGACC TGTGGAAAGA CCACCTGTCG ACCATGGACC ACCTGCGTCA CGGTATTCAC CTGCGTGGTT ATGCGCAGAA GAACCCGAAG CAGGAGTACA AGCGCGAGTC GTTCAGCCTG TTCCAGGAGC TGTTGGAGTC GATCAAGCGC GACACCATCC GTGTGCTGTC GCACGTACAG GTTCGCCGCG AAGACCCGGC CGAAGAAGAA GCTCGCCTGC GCCGCGAGGC CGAAGAGCTG GCGAGTCGCA TGCAGTTCCA GCACGCCGCT GCACCGGGCC TGGGAAGCGA GCAACTGAGC GAGGAGGGTG CCGAAGTAGC GGTAGCCTCG GCGCCAGTAC GCAATGACCA GAAGCTGGGC CGCAACGAGC CGTGCTGGTG TGGTTCGGGC AAGAAGTTCA AGCATTGCCA CGGTCAGATC GAGTGA
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Protein sequence | MFAPLLKKLF GSKNEREVKR MLKTVSIVNA FEEKMVALSD EQLRGKTAEF KERLAKGETL DQLLPEAFAV AREAGKRVMG MRHFDVQLIG GMTLHEGMIA EMRTGEGKTL VGTLAVYLNA LSGKGVHVVT VNDYLARRDA NWMRPLYEFL GLSVGIVSAF QPPEEKRAAY AADITYGTNN EFGFDYLRDN MAFSQDEKFQ RELNFAVIDE VDSILIDEAR TPLIISGQAE DSSKLYIEIN RLIPRLTQHI EEVEGQVTQE GHFTIDEKSR QVELNEAGHQ FIEEMLAQAG LLAEGESLYS AHNLGLLTHV YAGLRAHKLF HRNVEYIVQD GQVLLIDEHT GRTMPGRRLS EGLHQAIEAK ENLNIQAESQ TLASTTFQNY FRLYTKLSGM TGTADTEAFE FQSIYGLNVM VIPPNKPLAR KDYNDLVYLT ADEKYAAIIA DIKESMKLGR PVLVGTATIE TSEHMSNLLK KEGIDHKVLN AKYHEKEAEI IAQAGAPGAL TIATNMAGRG TDILLGGNWE AEVAALENPT AEQIAQIKAD WQKRHQQVIE TGGLHVIASE RHESRRIDNQ LRGRSGRQGD PGSSRFYLSL EDSLMRIFAS DRVKNFMKAL GMQSGEAIEH RMVTNAIEKA QRKVEGRNFD IRKQLLEYDD VANEQRKVIY HMRNSLLAAE NIGDTIVEFR KEVLDATISQ HIPPQSLPEQ WDVAGLEASL ASDFAIKLPI RQWLDEDDHL YEETLREKLL SEITTAYTEK EDQAGLEALR TFEKQILLRV LDDLWKDHLS TMDHLRHGIH LRGYAQKNPK QEYKRESFSL FQELLESIKR DTIRVLSHVQ VRREDPAEEE ARLRREAEEL ASRMQFQHAA APGLGSEQLS EEGAEVAVAS APVRNDQKLG RNEPCWCGSG KKFKHCHGQI E
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