| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1339 |
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| Symbol | ddl |
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| ID | 1044021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1525810 |
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| End bp | 1526766 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637144740 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | NP_743498 |
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| Protein GI | 26988073 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.266833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0340242 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCAGCG CCTACGACAA GCTGCACTCG ACCCTGGACG TCAAGGCGTT CGGTCGCGTC
GCCGTGCTGT ACGGTGGCAA GAGCGCCGAG CGTGAAGTGT CGCTGAAATC CGGCGCCGCA
GTGATCGATG CGCTGAGCAC TGCCGGCGTC GACGTGGTTG CCATCGACGT CGGTGACGAC
CTGCTCGCAC GCCTGCAGAG CGAGAAGATT GACCGCGCCT TCATCATCCT CCACGGCCGT
GGCGGTGAAG ACGGGAGTAT GCAAGGTTTG CTGGAGTGCC TGGGCATCCC CTACACCGGC
AGCGGCATCC TGGCTTCGGC GCTGGCGATG GACAAGCTGC GCACCAAGCA GGTGTGGCAG
AGCCTGGGTA TTCCCACGCC ACGCCACGCG GTGCTGGCGA GCGAGAGCGA TTGTTTGCAG
GCCAGTACGG AACTGGGCTT CCCGCTTATC GTCAAACCCG CCCATGAAGG CTCTAGTATC
GGCATGGCCA AGGTGAACAG CACCCAGGAA CTGGTCGCCG CCTGGCAGGA CGCCGCCAAA
TACGATTCCC AGGTACTGGT GGAGCAGTGG ATCCACGGCC CGGAGTTCAC CATCGCGGTA
CTGCGCGGCC AGGTGCTGCC GCCGATCGCC CTGGGTACGC CGCACGTGTT CTACGACTAT
GACGCCAAGT ACATCGTCAA CGATACCCAG TACCGCATCC CGTGCGGGCT GGATAGCGTC
AAGGAACAGG AACTGATCGA CCTGACCGCG CGCGCCTGCG ATGCCATTGG CATCGAAGGC
TGGGGGCGGT TGGACGTGAT GCAGGACGAG CAGGGCCGGT TCTGGCTGCT CGAAGTCAAC
ACCGCACCAG GCATGACAGA TCATAGCCTG GTGCCCATGG CGGCCCGTGC GGCTGGCCTG
GACTTCCAGC AACTGGTGCT GGCAATCCTG GCCGAAAGCG TGGCGACGCG AGGTTAA
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| Protein sequence | MTSAYDKLHS TLDVKAFGRV AVLYGGKSAE REVSLKSGAA VIDALSTAGV DVVAIDVGDD
LLARLQSEKI DRAFIILHGR GGEDGSMQGL LECLGIPYTG SGILASALAM DKLRTKQVWQ
SLGIPTPRHA VLASESDCLQ ASTELGFPLI VKPAHEGSSI GMAKVNSTQE LVAAWQDAAK
YDSQVLVEQW IHGPEFTIAV LRGQVLPPIA LGTPHVFYDY DAKYIVNDTQ YRIPCGLDSV
KEQELIDLTA RACDAIGIEG WGRLDVMQDE QGRFWLLEVN TAPGMTDHSL VPMAARAAGL
DFQQLVLAIL AESVATRG
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