| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1295 |
|---|
| Symbol | rhlB |
|---|
| ID | 1044132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1480293 |
|---|
| End bp | 1481735 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637144697 |
|---|
| Product | ATP-dependent RNA helicase RhlB |
|---|
| Protein accession | NP_743455 |
|---|
| Protein GI | 161378136 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.587657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAAAG CACTCAGAAA AATATTCGGC AAGGGAGAGG CCGCACCACA AGCCGCCGCT
CCTGCTGCCA GCGTGACGCC GGAAGCCCGG CCCGCGGCAA AACCGGCCGC ACCCCATGCC
AACCCCGCCC CCAAGGCTGA GCAACCTGCC GCCGCGACGC CACCTGCCGA TCAACCGGCC
AAGGACAAAC CGCGCCGCGA ACGCAAGCCC AAGCCACAGG CCAGCCTGTG GAAGCCCGAA
GACTTCGTGG TCGAGCCGCA GGAAGGCAAA ACCCGCTTCC ACGACTTCAA GCTGTCCAAC
GAGCTGATGC ACGCCATCCA CGACCTGGGC TTCCCGTACT GCACGCCGAT CCAGGCGCAG
GTCCTGGGTT ACACCCTGCG TGGCCAGGAC GCCATCGGCC GGGCCCAGAC GGGCACCGGC
AAGACGGCCG CCTTCCTGAT CTCGATCATT TCCCAGTTGC AGCAGACGCC ACCGCCTAAA
GAGCGCTACA TGGGCGAGCC GCGGGCGCTG ATCATCGCCC CCACCCGCGA GCTGGTGGTG
CAGATCGCCA AGGACGCCGC TGCCCTGACC AAGTACACCG GCCTGAACGT GATGAGCTTC
GTCGGTGGCA TGGACTTCGA CAAGCAGCTC AAAGCCCTGG AAGCGCGCCA CTGCGATATT
CTGGTGGCTA CGCCGGGCCG CCTGCTGGAC TTCAACCAGC GTGGTGAAGT GCACCTGGAC
ATGGTCGAGG TGATGGTGCT TGACGAAGCC GACCGTATGC TCGACATGGG CTTCATCCCC
CAGGTCCGCC AAATCATTCG TCAGACACCG CCTAAAAGCG AGCGCCAGAC CCTGCTGTTC
TCCGCCACCT TCACCGACGA TGTGATGAAC CTGGCCAAGC AGTGGACCAC CAACCCGGCC
ATCGTCGAGA TCGAGCCGGA GAACGTGGCC AGCGAAACGG TGGAGCAGCA CGTGTATGCG
GTGGCCGGCA GCGACAAGTA CAAACTGTTG TACAACCTGG TGACCCAGAA CAAGTGGGAA
CGGGTGATGG TGTTCGCCAA CCGCAAGGAC GAAGTGCGGC GCATCGAGGA AAAGCTGGTA
CGCGACGGTA TCAATGCGGC CCAGCTGTCG GGCGACGTGC CGCAGCACAA ACGCATCCGA
ACCCTGGAGA GCTTCCGCGA AGGGCGCATC ACCGTGTTGG TCGCCACCGA CGTGGCCGGG
CGTGGGATCC ATATCGATGG CATCAGCCAC GTGATCAACT TCACCCTGCC GGAAGACCCT
GACGACTACG TGCACCGCAT TGGCCGTACC GGCCGTGCCG GCACCAGTGG TGTATCGATC
AGCTTTGCCG GTGAGGATGA CTCGTATCAG CTGCCGGCGA TCGAAGCGCT GCTGGGGCGC
AAGATCAAGT GCGAGATGCC GCCGGATGAA CTGCTCAAGC CGGTGCCGCG CAAGCATCAC
TGA
|
|---|
| Protein sequence | MLKALRKIFG KGEAAPQAAA PAASVTPEAR PAAKPAAPHA NPAPKAEQPA AATPPADQPA
KDKPRRERKP KPQASLWKPE DFVVEPQEGK TRFHDFKLSN ELMHAIHDLG FPYCTPIQAQ
VLGYTLRGQD AIGRAQTGTG KTAAFLISII SQLQQTPPPK ERYMGEPRAL IIAPTRELVV
QIAKDAAALT KYTGLNVMSF VGGMDFDKQL KALEARHCDI LVATPGRLLD FNQRGEVHLD
MVEVMVLDEA DRMLDMGFIP QVRQIIRQTP PKSERQTLLF SATFTDDVMN LAKQWTTNPA
IVEIEPENVA SETVEQHVYA VAGSDKYKLL YNLVTQNKWE RVMVFANRKD EVRRIEEKLV
RDGINAAQLS GDVPQHKRIR TLESFREGRI TVLVATDVAG RGIHIDGISH VINFTLPEDP
DDYVHRIGRT GRAGTSGVSI SFAGEDDSYQ LPAIEALLGR KIKCEMPPDE LLKPVPRKHH
|
|---|
| |