| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1164 |
|---|
| Symbol | |
|---|
| ID | 1045668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1339428 |
|---|
| End bp | 1340324 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637144561 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_743324 |
|---|
| Protein GI | 26987899 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.376229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0112805 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGA TCCACCTGAT GAAGGTATTC GTCGCCGTCG GCGAGCTGGA AAGCTTCGCC
GCTGCGGCCC GCCGTCTGGA CATTTCCCCG GCCGCCGTCA CCCGCGCCGT CAGCGCCCTT
GAAGAGCAGC TCGGGGTCAA GCTGTTGCTG CGCACAACAC GCAGCGTGCG TTTGACCGAG
GCCGGCGGCC GCTATCTGGA AGACACCCGG CACATCCTCG CCAGTATCCA CGAGGCCAAT
GAGGCCGCTG CCGGCATCAA CGCGACTCCC AGGGGCGACC TGGCGGTGAC CGCGCCGATC
CTGTTCGGCA AGAAGTTCGT CATGCCGTGC ATCGTCCGTT ACCTGCAGCA GTACCCGGAA
GTCGATGTTT CCGCGTTCTT TCTCGACCGC GTGGTAAACA TGGTCGAGGA GGGCATGGAC
GTGGCCGTGC GCATCGGACC GTTGCCCGAC TCCGGGTTGA AGGCGCTGCG GGTGGGCAGG
GTGCGGCGCA TGTTGTGTGC CTCGCCCGAC TACCTGGCGC GCCATGGTGT GCCGAAGCAC
CCGTCGGACC TGGCCGGGCA TGCGATAATC GGCACCACCA ACCTGTCGCC GCGTGCGGGT
TGGCGCTTCG GAGTGACCGA CGAGCCGACC TTGGTGCGCA TGAAGCCGCG GCTGACGGTC
ACCAGCAATG ACGGGGCAAT CGCAGCTGCC AGCGGCGGGC TGGGGATTGC CCGGCTGCTG
TCGTACCAGG TGGCAGACGA ACTGGCCAGC GGGCAGTTGC AGGTGCTGCT GGCCGAGTAC
GAAGAGGCGC CCTGGCCCAT TCATGTGCTG CACCGCGAAA GCAAGTACGG CTCGGCCAAG
GTCAGGGCCT TTATCGACAT GCTGGCGCAA GGATTGCGCG ATCAGCAGCT GGATTAA
|
|---|
| Protein sequence | MDQIHLMKVF VAVGELESFA AAARRLDISP AAVTRAVSAL EEQLGVKLLL RTTRSVRLTE
AGGRYLEDTR HILASIHEAN EAAAGINATP RGDLAVTAPI LFGKKFVMPC IVRYLQQYPE
VDVSAFFLDR VVNMVEEGMD VAVRIGPLPD SGLKALRVGR VRRMLCASPD YLARHGVPKH
PSDLAGHAII GTTNLSPRAG WRFGVTDEPT LVRMKPRLTV TSNDGAIAAA SGGLGIARLL
SYQVADELAS GQLQVLLAEY EEAPWPIHVL HRESKYGSAK VRAFIDMLAQ GLRDQQLD
|
|---|
| |