| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1144 |
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| Symbol | |
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| ID | 1045464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1309266 |
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| End bp | 1311530 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637144539 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_743305 |
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| Protein GI | 26987880 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.252885 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGC TGGGGCTGCA ACTGTTCACC GATCTTCCCG CAACCGGGCG CATCGTCATC
GACTGCCGTC ATGAACCGCT CTTGGTTCTG CTCGCCTATT TCGTTGCTTG CGCGGCCTGT
TTCGCCACGC TCGACATGGC CGAGCGTCAG TCCCACAGCG ACGACCCCAC CGCCCACCGA
CAATGGAACA TGCTTGGAGC CTGCTGCCTG GCAGGCGGCA TATGGGCCAT GCATTTCATC
AGCATGCTGG CCTTTCGGGC CCCGGTGGAC GTGCACTACG ACGTATCCCT GACCATTCTT
TCACTGCTCA TCGCACTGGG CGTGGCCTGG TTGGCCATGC ACAGCCTCGA ACGCAGCAAC
ATGCGCGCGC ACTATTTCGT GCCGAGCGCA GGGCTGATCG GCCTGGGCAT CATCCTCATG
CATTTTGTCG GCATGGCCGC GATGGAAACG GGTGCCCGCC AGTACTACCA AACCGGCTTG
CTACTTGCCT CTGCCGCCAT TGCCCTGCTC ACCGCCCTGA CCGCGCTGTA CCTGGCCCGC
TACTTGCGCA ATGGCAGCGG TACCCTGTAC CAGGCCATGA AGTACGGCGC CAGCCTGCTG
ATGGCCGGCG GCATCGTCGC CACTCATTTC ACCGCGATGT CGGCCATGAC CTTGGTCATC
CCTGCCGATA CCGCACTGCG CCTGCCGTCG GGCGACAACA GCCTGCAACT GGGACTGGGC
ATCGGCTTCA TCACCCTGCT GATCAGTGGC GCCAGCATCA GCGCCGCACT GGCCGACAAG
AAGCTGCAAA GCAAGGAGCA CGACCTGCGC CGGGTCAGCG TACTGCTCAG CCAACTGGAC
CAGGCCCGCG CTTCGCTGCA GCAGGCGGCG CACTATGATG CCCTGACCAA CCTGCTCAAC
CGCCGTGGAT TCAACCAGGT ATTCGCCGAG CGCCTGGTCG AACATCAGGC CAGCGAAAAC
CGCCTGGCTG TCATGTTCCT CGACATCGAC CATTTCAAGC GTATCAACGA CAGCCTTGGC
CACGACGCCG GTGACGAGCT GCTCAAGGTG ATCGCCAACC ACATCAAGGC CGCTACCCGC
AACCACGACC TGGTTGCGCG CTTTGGTGGC GACGAGTTCT GTGTGGTCAC CAGCCTGAAC
AGCCGCGACG AAGCCCGCCA CCTGGCCCAG CGCATCATGC AACGGATGAA AGACCCCATC
GACCTGGGCG GGCGGCGCAT GGTCATGACC ACCAGCATCG GTATAAGTAT CTTCCCGGAC
GATGGCAGCA CAGCCGAAGA GCTGCTCAAG CATGCCGACC TGGCCCTCTA CCAATCCAAG
GACAACGGGC GCAACAGCCT GAATTTCTTC AATGACAGCC TGAAGGCTCG CGCGTCGATC
GCCTTGCAAC TGGAAGAAGA GCTGCGCCTG GCGCTGCTCG AAGAGCGCGG GCTGTGTGTG
CACTACCAGC CGATCTTCGA CCTGCGCAGC GGGCAAGTGG CCAAACTGGA AGCGCTGGTA
CGCTGGCAGC ATCCTCAACA CGGCCTGCTC GGGCCCGACC GTTTTGTCGG CATTGCCGAA
GCCAACGGCC TGATCATCGA CCTTGACCTG TGGGTGCTGC GCCATGCCTG TGCCGACCTG
GCCCACTTGC AGCGCCACGG CTACGGCGAG GTCCAGGTCA CGGTCAATTG CTCGGCAGTC
ACCCTCAGCC ACGACGAACT GCCTAACGAA GTAGAAAAGG CGCTGTTCCA CGCCGGCCTT
GCGCCGCGCC ACCTGGAGCT GGAGGTGACC GAGAACGCCC TGGTAGGGGA TATCCAGCGC
ACGGTCAGCC TGCTCAAACG CGTCAGGGCT CTGGGGGTGG CACTTTCGAT CGATGATTTT
GGTACCGGCT ACTCGTCACT GGCTTACCTC AAGCGCCTGC CGCTGGATGT GCTGAAGATC
GACCGCACCT TCCTGCAGGA TGTACCGGGC AGCCAGAAAG ACCGGGAAAT TGTCCAGGCG
ATCATCGCCA TGGCGCATAC CCTGCACCTG CGGGTAGTCA GCGAGGGCGT GGAAACCGCC
GAACAGCAGG CGTTCCTCGA AAGCCATGGT TGCGACTACC TGCAGGGCTA CCTGTTGGGG
CGCCCCGTAC CGCTGGCCGA GTTGCGCCCA CTGCTGGAGC GGTTGCAGCG CCAGAATGGC
CGGATCACAC CTTGTTGCGG TACAGCTCTA CCAGGGTCGC CGGATCTTTT TGCAGGTAAC
CCTGGCTACC GTGCAAGCGC ATCAGTTGCG CGGCAAGGCC ACTGA
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| Protein sequence | MEWLGLQLFT DLPATGRIVI DCRHEPLLVL LAYFVACAAC FATLDMAERQ SHSDDPTAHR
QWNMLGACCL AGGIWAMHFI SMLAFRAPVD VHYDVSLTIL SLLIALGVAW LAMHSLERSN
MRAHYFVPSA GLIGLGIILM HFVGMAAMET GARQYYQTGL LLASAAIALL TALTALYLAR
YLRNGSGTLY QAMKYGASLL MAGGIVATHF TAMSAMTLVI PADTALRLPS GDNSLQLGLG
IGFITLLISG ASISAALADK KLQSKEHDLR RVSVLLSQLD QARASLQQAA HYDALTNLLN
RRGFNQVFAE RLVEHQASEN RLAVMFLDID HFKRINDSLG HDAGDELLKV IANHIKAATR
NHDLVARFGG DEFCVVTSLN SRDEARHLAQ RIMQRMKDPI DLGGRRMVMT TSIGISIFPD
DGSTAEELLK HADLALYQSK DNGRNSLNFF NDSLKARASI ALQLEEELRL ALLEERGLCV
HYQPIFDLRS GQVAKLEALV RWQHPQHGLL GPDRFVGIAE ANGLIIDLDL WVLRHACADL
AHLQRHGYGE VQVTVNCSAV TLSHDELPNE VEKALFHAGL APRHLELEVT ENALVGDIQR
TVSLLKRVRA LGVALSIDDF GTGYSSLAYL KRLPLDVLKI DRTFLQDVPG SQKDREIVQA
IIAMAHTLHL RVVSEGVETA EQQAFLESHG CDYLQGYLLG RPVPLAELRP LLERLQRQNG
RITPCCGTAL PGSPDLFAGN PGYRASASVA RQGH
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