Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1047 |
Symbol | xcpR |
ID | 1044282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1197689 |
End bp | 1199140 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637144442 |
Product | type II secretion system protein E |
Protein accession | NP_743208 |
Protein GI | 26987783 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATGCTGC CCTATCGCCA GGCACGGCAG AGCGGAGTGG CCATGGCCCC GGCAGAGCAG GGCTGGCAGC TATGGCTGCG GCCCGACGCC GACAATGCCC AGTTGCAGGA GTTGCTGCGT GTGCATGGCC AGCCAAGCCT GCTCGAATAC CTGGAACCTG CGCTGTTCGA CGAGCGCCTT GGCCAGCTGT ACCAGGCCGG CGATGCCGCC ACCGAAGCGT TGATCGAAGG CATCGGCGAC CAGGTCGACC TGGATAGCCT GATGAGCGAG ATGCCGCGCA TCGAAGACCT GCTTGAAAGC GACGACGAAG CCCCGGTGAT CCGCCTGATC AACGGCCTGT TCGGCCAGGC GCTGCGGCTG CGCGCCTCGG ATATCCATAT CGAGACCTTC GAGCAGAGCC TGGTGGTGCG TCTGCGGGTC GATGGCCACC TGCGTGAGGT GCTGCGTCCT CCACGTGCGT TGTCGGCCAT GCTGGTATCA CGGATCAAGG TCATGGCCCG CCTGGACATT GCGGAAAAGC GTCAGCCCCA GGACGGCCGC ATCACCTTGC GCGCGGCGGG GCGCGAAGTG GACGTACGAG TCTCGACCTT GCCCGGCATC CACGGCGAGC GGGTGGTGAT GCGCGTGCTC GACAAGCAGG CCAGCCTGCT GGCGCTGGAT AACCTGGGCA TGCCGGCAGC GGTATTGCAG GGCCTGCGCA GTTGCCTGGC GCGGCCCAAC GGCATTGTGC TGTCCACCGG GCCGACCGGT TCGGGCAAGA CCACGACCTT GTACGCCAGC CTGAACAGCC TCAACGATGG CAGCCGCAAC ATCCTCACCG TCGAGGACCC GGTGGAGTAC GCCATCGCCG GCATTGGCCA AACCGCCATC AACCCGCGTG CCGGGCTGAC GTTTGCCAGT GGCCTGCGCG CCATCCTGCG TCAGGACCCT GACGTGATCA TGCTCGGCGA AATCCGCGAT CAGGAGACTG CGCAGATCGC CGTGCAGGCC AGCCTCACCG GCCACCTGGT GCTGTCGACC TTGCACACCA ACAATGCGGT AGGCGCAGTG ACCCGCCTGC GCGACATGGG CATCGAGCCC TTCCTGATCG CCTCGTGCCT GCGCGGCGTC CTGGCCCAGC GCCTGGTGCG GCGTTTGTGC AGCTGTGCCG TGGCGCACCC GCTACAGGCT GCCGAGCGCG AGCTATGGCC TGAGCTTGCG GCGTTGGGCT GCTCTTATCA CGCCGTGGGT TGCGAGCAGT GCCAGGGCAG CGGTTATATC GGGCGACTGG GGTTGTACGA ATTCATCGAG CTGGACGCTG GGCTCATCGG CCTGTTGTAC GACGGCGCCA GTGAGCTGGC CATGCAGGAC TATCTGGCTG ACCGGCGCCA AAGCCTGGTG GCGATGGCCA GCGATTGCCT GGCTCGCGGT GAGACCAGCC TGGCCGAAGT GCTGCGCGTG GTGCAGGGCT AA
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Protein sequence | MMLPYRQARQ SGVAMAPAEQ GWQLWLRPDA DNAQLQELLR VHGQPSLLEY LEPALFDERL GQLYQAGDAA TEALIEGIGD QVDLDSLMSE MPRIEDLLES DDEAPVIRLI NGLFGQALRL RASDIHIETF EQSLVVRLRV DGHLREVLRP PRALSAMLVS RIKVMARLDI AEKRQPQDGR ITLRAAGREV DVRVSTLPGI HGERVVMRVL DKQASLLALD NLGMPAAVLQ GLRSCLARPN GIVLSTGPTG SGKTTTLYAS LNSLNDGSRN ILTVEDPVEY AIAGIGQTAI NPRAGLTFAS GLRAILRQDP DVIMLGEIRD QETAQIAVQA SLTGHLVLST LHTNNAVGAV TRLRDMGIEP FLIASCLRGV LAQRLVRRLC SCAVAHPLQA AERELWPELA ALGCSYHAVG CEQCQGSGYI GRLGLYEFIE LDAGLIGLLY DGASELAMQD YLADRRQSLV AMASDCLARG ETSLAEVLRV VQG
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