Gene PP_1047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1047 
SymbolxcpR 
ID1044282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1197689 
End bp1199140 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content66% 
IMG OID637144442 
Producttype II secretion system protein E 
Protein accessionNP_743208 
Protein GI26987783 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02533] general secretory pathway protein E 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATGCTGC CCTATCGCCA GGCACGGCAG AGCGGAGTGG CCATGGCCCC GGCAGAGCAG 
GGCTGGCAGC TATGGCTGCG GCCCGACGCC GACAATGCCC AGTTGCAGGA GTTGCTGCGT
GTGCATGGCC AGCCAAGCCT GCTCGAATAC CTGGAACCTG CGCTGTTCGA CGAGCGCCTT
GGCCAGCTGT ACCAGGCCGG CGATGCCGCC ACCGAAGCGT TGATCGAAGG CATCGGCGAC
CAGGTCGACC TGGATAGCCT GATGAGCGAG ATGCCGCGCA TCGAAGACCT GCTTGAAAGC
GACGACGAAG CCCCGGTGAT CCGCCTGATC AACGGCCTGT TCGGCCAGGC GCTGCGGCTG
CGCGCCTCGG ATATCCATAT CGAGACCTTC GAGCAGAGCC TGGTGGTGCG TCTGCGGGTC
GATGGCCACC TGCGTGAGGT GCTGCGTCCT CCACGTGCGT TGTCGGCCAT GCTGGTATCA
CGGATCAAGG TCATGGCCCG CCTGGACATT GCGGAAAAGC GTCAGCCCCA GGACGGCCGC
ATCACCTTGC GCGCGGCGGG GCGCGAAGTG GACGTACGAG TCTCGACCTT GCCCGGCATC
CACGGCGAGC GGGTGGTGAT GCGCGTGCTC GACAAGCAGG CCAGCCTGCT GGCGCTGGAT
AACCTGGGCA TGCCGGCAGC GGTATTGCAG GGCCTGCGCA GTTGCCTGGC GCGGCCCAAC
GGCATTGTGC TGTCCACCGG GCCGACCGGT TCGGGCAAGA CCACGACCTT GTACGCCAGC
CTGAACAGCC TCAACGATGG CAGCCGCAAC ATCCTCACCG TCGAGGACCC GGTGGAGTAC
GCCATCGCCG GCATTGGCCA AACCGCCATC AACCCGCGTG CCGGGCTGAC GTTTGCCAGT
GGCCTGCGCG CCATCCTGCG TCAGGACCCT GACGTGATCA TGCTCGGCGA AATCCGCGAT
CAGGAGACTG CGCAGATCGC CGTGCAGGCC AGCCTCACCG GCCACCTGGT GCTGTCGACC
TTGCACACCA ACAATGCGGT AGGCGCAGTG ACCCGCCTGC GCGACATGGG CATCGAGCCC
TTCCTGATCG CCTCGTGCCT GCGCGGCGTC CTGGCCCAGC GCCTGGTGCG GCGTTTGTGC
AGCTGTGCCG TGGCGCACCC GCTACAGGCT GCCGAGCGCG AGCTATGGCC TGAGCTTGCG
GCGTTGGGCT GCTCTTATCA CGCCGTGGGT TGCGAGCAGT GCCAGGGCAG CGGTTATATC
GGGCGACTGG GGTTGTACGA ATTCATCGAG CTGGACGCTG GGCTCATCGG CCTGTTGTAC
GACGGCGCCA GTGAGCTGGC CATGCAGGAC TATCTGGCTG ACCGGCGCCA AAGCCTGGTG
GCGATGGCCA GCGATTGCCT GGCTCGCGGT GAGACCAGCC TGGCCGAAGT GCTGCGCGTG
GTGCAGGGCT AA
 
Protein sequence
MMLPYRQARQ SGVAMAPAEQ GWQLWLRPDA DNAQLQELLR VHGQPSLLEY LEPALFDERL 
GQLYQAGDAA TEALIEGIGD QVDLDSLMSE MPRIEDLLES DDEAPVIRLI NGLFGQALRL
RASDIHIETF EQSLVVRLRV DGHLREVLRP PRALSAMLVS RIKVMARLDI AEKRQPQDGR
ITLRAAGREV DVRVSTLPGI HGERVVMRVL DKQASLLALD NLGMPAAVLQ GLRSCLARPN
GIVLSTGPTG SGKTTTLYAS LNSLNDGSRN ILTVEDPVEY AIAGIGQTAI NPRAGLTFAS
GLRAILRQDP DVIMLGEIRD QETAQIAVQA SLTGHLVLST LHTNNAVGAV TRLRDMGIEP
FLIASCLRGV LAQRLVRRLC SCAVAHPLQA AERELWPELA ALGCSYHAVG CEQCQGSGYI
GRLGLYEFIE LDAGLIGLLY DGASELAMQD YLADRRQSLV AMASDCLARG ETSLAEVLRV
VQG