| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1046 |
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| Symbol | xcpQ |
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| ID | 1044347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1195938 |
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| End bp | 1197692 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637144441 |
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| Product | general secretion pathway protein D |
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| Protein accession | NP_743207 |
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| Protein GI | 26987782 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.603917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTTA GATACTGCAT GGCGGCTGCG CTGAGCCTGG CCTTGTCCAT GGCCTATGCC
CAAGAGCCGG TGTTCGATGA CAACGGTACG CCGATGTACG AAGTGAATTT CGTCGATACC
GAACTCGGCG AGTTCATCGA CAGCGTGTCG CGCATCACCG GCACCACCTT CATCGTCGAC
CCCCGGGTCA AGGGCAAGGT CACCGTGCGC ACCGTCGACC TGCACGACGC CGACGCCATC
TACGACATCT TCCTGGCCCA ACTGCGCGCC CAGGGCTATG CCACCGTCGA CCTGCCCAAC
GGCAGCGTGA AAATCGTGCC CGACCAGGCC GCGCGCCTGG AGCCGGTGCC AGTGGAGGCG
GGCGGGCAGC AGGGCGAGGG CAGCGACAGC GTGGCCACCC GCGTATTCAG CGTGCGCAAC
GCCGCCAGCG AACAGGTACT GGGCATCCTC AAACCGCTGA TCGACCCGCG AGTTGGGGTT
ATTACACCGT ACCCGGCGGC GCACCAGTTG GTGGTGACTG ACTGGCGCAG CAACCTCGAA
CGCATCGCCA GCCTGCTGCG CCAGCTCGAC CGCCCTCAAG AGGTACCGGG CAGCGGCAGC
ACCCAGGTGA TCTACTTGCG CCATGCCAAT GCCGGCGAAG TGGTCAAGGT GCTGCGAGGG
CTCAGCCAGG AAGGGGCGGT GCCGGTTGAA GGCGCGGGTG AGGCAGAGGG CAAGGACCGG
CCGGTGGTGC CAGCCGCCGG TGGCTCGGGC ATCCGCCTGG AATACGAAGA AGGTACCAAT
GCCGTGGTCA TGGTCGGCCC CGACAGCGAG CTGGCGGCGT ACCGGGCCAT TGTCGAGCAA
CTGGATATTC GCCGTGCCCA GGTGGTGGTC GAAGCGATCA TCGCCGAGGT GTCCGACAGC
AGCGCCCAGG AGCTGGGCGT GCAGTGGCTG TTCGCCGACG AGAAGTTCGG CGCCGGTATC
GTCAACTTCG GCAGTAACGG GGTGAATATC GCCAGCATCG CCGGCGCCGC CGCCAGTGGC
GACAACGAGG CCCTGGGCGA TCTGTTGTCC ACCACCACCG GTGCCACGGC GGGCATCGGC
CATTTCGGCG GTGGCTTCAA CTTCGCCATG CTGGTCAACG CGCTGAAGGG CAAGAGCGGC
TTCAACCTGC TGTCCACGCC CACCTTGCTG ACCCTGGACA ACGCCGAAGC GTCGATTTTG
GTCGGCCAGG AGGTGCCCTT CGTCACCGGC TCCGTGACGC AGAACAACGC CAACCCGTAC
CAGACCATCG AGCGCAAGGA AGTCGGGGTG AAGCTGCGCA TCAAGCCGCA GATCAATATC
GACAACAGCG TGCGCCTGGA CATCGTCCAG GAGGTGTCGT CGATTGCCGA CACCAGCTCG
GCCAGCGACG TGATCACCAA CAAGCGCGAG ATCAAGACCA AGGTCATGGT CGAGGACAAC
GGCCTGGTGA TACTTGGCGG GCTGATCAGC GACGAGTTGA GTACCAGCGA CCAGCGTGTG
CCACTGCTCG GCGACATTCC TTATCTTGGC CGGTTGTTCC GCTCCGATGC CACCCGCAAT
ACCAAGCAGA ACCTGATGGT GTTCATCCGC CCGCGTATCC TGCGCGACGG GCCGAGCCTG
GCGGGCCTCA GTGAAGACAA GTACCGCACC TTGCAGCAGA CCACACCGCT GCAGTTGCCG
GACCTTGCAG AGGGCACGCG GCTGCTGCAG GTATTCCCCG CCAGCCGCGC ACGCCTGGAA
GGCGGTGACT GGTGA
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| Protein sequence | MPVRYCMAAA LSLALSMAYA QEPVFDDNGT PMYEVNFVDT ELGEFIDSVS RITGTTFIVD
PRVKGKVTVR TVDLHDADAI YDIFLAQLRA QGYATVDLPN GSVKIVPDQA ARLEPVPVEA
GGQQGEGSDS VATRVFSVRN AASEQVLGIL KPLIDPRVGV ITPYPAAHQL VVTDWRSNLE
RIASLLRQLD RPQEVPGSGS TQVIYLRHAN AGEVVKVLRG LSQEGAVPVE GAGEAEGKDR
PVVPAAGGSG IRLEYEEGTN AVVMVGPDSE LAAYRAIVEQ LDIRRAQVVV EAIIAEVSDS
SAQELGVQWL FADEKFGAGI VNFGSNGVNI ASIAGAAASG DNEALGDLLS TTTGATAGIG
HFGGGFNFAM LVNALKGKSG FNLLSTPTLL TLDNAEASIL VGQEVPFVTG SVTQNNANPY
QTIERKEVGV KLRIKPQINI DNSVRLDIVQ EVSSIADTSS ASDVITNKRE IKTKVMVEDN
GLVILGGLIS DELSTSDQRV PLLGDIPYLG RLFRSDATRN TKQNLMVFIR PRILRDGPSL
AGLSEDKYRT LQQTTPLQLP DLAEGTRLLQ VFPASRARLE GGDW
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