| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0937 |
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| Symbol | cafA |
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| ID | 1044846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1078804 |
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| End bp | 1080261 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637144332 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | NP_743098 |
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| Protein GI | 26987673 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAG AGATCCTGAT CAACATCACC CCGATGGAGT CACGTGTGGC GGTGGTGGAA
AACGGGGTGC TGCAGGAGGT GCACGTCGAG CGCACCCAGC GCCGTGGCAT CGTCGGCAAT
ATCTACAAGG GCAAGGTGGT GCGTGTGCTG CCAGGCATGC AGGCGGCCTT CGTCGACATT
GGCCTCGAAC GCGCAGCGTT TATCCATGCC TCGGAAATCT CCCAGCGCGA AGGCTCGGCG
GTAGAGAACA TCACCGCACT GGTACATGAA GGCCAGGCCC TGGTGGTGCA GGTGACCAAG
GACCCGATCG GCACCAAGGG TGCACGCCTG ACCACCCAGC TATCGATTCC GTCGCGTTAC
CTGGTGTACA TGCCACGCAG CAGCCATGTC GGTATTTCGC TGAAAATCGA GGACGAAGCC
GAGCGTGAGC GCCTCAAGCA AGTGGTCAGC GACTGCATGG ATGGCGAAAA CATCAAGGAT
GCCGGCGGCT TCATCTTGCG CACCGCCGCC GAAGGCGCGC GTGCCGAGGA GATCTTGCAG
GACATCCGTT ACCTGCGCCG CCTGTGGGAG CAGATTGGCA CCCAGATCAA GACCTGCGGC
GCGCCCACGG TCATTTACGA AGACCTTGGC CTGGCCCTGC GTACCCTGCG CGACCTGGTC
AACCCGAAGA TCGAGAAGAT CCGCATCGAC TCGCGGGAAA CCTTCCAGAA GACCACGCAG
TTCGTCGGCG AGTTGATGCC GGAAATTGCC GACCGCCTCG AACACTACCC GGGCGAGCGC
CCAATCTTTG ACCTGTACGG CGTCGAAGAC GAGATCCAGC GGGCTCTGGA GCGCAAGGTG
CCGTTGAAGT CCGGCGGTTA CCTGGTGGTC GACCCGGCCG AAGCGATGAC CACCATCGAT
GTCAATACCG GGGCTTTCGT CGGCCATCGC AACCTCGAAG AAACCATCTT CAAGACCAAC
CTCGAGGCTG CTACCGCCAT CGCCCGACAA CTGCGCCTGC GCAACATTGG CGGCATCATC
ATCATCGACT TCATCGACAT GGAAGACGAA GATCACCAGC GCCAGGTACT GCGTACCCTG
GAAAAACAGC TGGAGCGCGA TCACGCCAAG ACCAACATCA TCGGCATCAC CGAGCTGGGC
CTGGTGCAGA TGACCCGCAA GCGCACGCGG GAAAGCCTGG AACAGGTGCT TTGCGAGCCG
TGCCTGGCCT GTCAGGGCCG CGGCAAGCTG AAAACGCCCG AGACCATCTG TTACGAAATA
TTCCGCGAGA TCCTGCGTGA GGCCCGTGCC TATCAGGCTG AAGGCTACCG TGTGCTGGCC
AACCAGAAGG TGGTCGACCG CCTGCTGGAT GAAGAGTCAG GCAACGTGGC GGAACTGGAA
GCTTTCATCG GTCGAACCAT TCGCTTCCAG GTCGAGTCGA TGTATTCGCA GGAACAATAC
GACGTGGTGC TGCTCTGA
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| Protein sequence | MSEEILINIT PMESRVAVVE NGVLQEVHVE RTQRRGIVGN IYKGKVVRVL PGMQAAFVDI
GLERAAFIHA SEISQREGSA VENITALVHE GQALVVQVTK DPIGTKGARL TTQLSIPSRY
LVYMPRSSHV GISLKIEDEA ERERLKQVVS DCMDGENIKD AGGFILRTAA EGARAEEILQ
DIRYLRRLWE QIGTQIKTCG APTVIYEDLG LALRTLRDLV NPKIEKIRID SRETFQKTTQ
FVGELMPEIA DRLEHYPGER PIFDLYGVED EIQRALERKV PLKSGGYLVV DPAEAMTTID
VNTGAFVGHR NLEETIFKTN LEAATAIARQ LRLRNIGGII IIDFIDMEDE DHQRQVLRTL
EKQLERDHAK TNIIGITELG LVQMTRKRTR ESLEQVLCEP CLACQGRGKL KTPETICYEI
FREILREARA YQAEGYRVLA NQKVVDRLLD EESGNVAELE AFIGRTIRFQ VESMYSQEQY
DVVLL
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