Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0897 |
Symbol | |
ID | 1044785 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1037869 |
End bp | 1039392 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637144292 |
Product | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit |
Protein accession | NP_743058 |
Protein GI | 26987633 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.728674 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTGA TCAAGCAAGA CGACCTGATT CAGAGCGTCG CCGACGCCCT GCAATTCATC TCGTACTACC ACCCCGTCGA TTTCATCCAG GCCATGCACG AGGCCTATCT GCGTGAGGAA TCGCCTGCTG CACGCGATTC CATCGCCCAG ATCCTGATCA ACTCGCGCAT GTGCGCCACC GGCCATCGTC CAATCTGCCA GGACACCGGT ATCGTCACCG TGTTCATCCG CGTGGGCATG GACGTGCGCT GGGATGGCGC CACCATGAGC GTCGACGACA TGATCAACGA AGGTGTGCGT CGCGCCTACA ACCTGCCTGA AAACGTCCTG CGCGCTTCGA TCCTGGCCGA CCCGGCCGGT GCCCGCAAGA ACACCAAGGA CAACACCCCG GCAGTGATCC ACTACTCCAT AGTCCCCGGC GACAAGGTGG AAGTCGATGT CGCAGCCAAG GGCGGCGGCT CGGAAAACAA GTCGAAGATG GCCATGCTCA ACCCGTCCGA CTCGATCGTC GACTGGGTAC TGAAGACCGT GCCGACCATG GGTGCTGGCT GGTGCCCGCC TGGCATGCTC GGCATCGGCA TCGGCGGTAC CGCCGAGAAG GCCGCGGTCA TGGCCAAGGA AGTGTTGATG GAGTCCATCG ACATTCACGA ACTGAAAGCC CGTGGCCCAC AGAACCGCCT GGAAGAAATC CGCCTGGAGC TGTTCGACAA GGTCAACCAG CTGGGCATCG GCGCCCAGGG CCTGGGTGGC CTGACCACCG TGCTCGACGT CAAGATCATG GACTACCCGA CCCACGCCGC GTCCTTGCCG GTGTGCATGA TCCCCAACTG CGCTGCTACC CGCCACGCCC ACTTCGTGCT CGATGGCACC GGCCCGGCAG AACTGGAAGC GCCGTCGCTG GACGCTTACC CGGAAATCGT CTGGGAAGCC GGCCCGAGCG CCCGTCGCGT CAACCTCGAC GACATCACCC CGGAAGAAGT GGCCAGCTGG AAGCCGGGCG AAACCATCCT GCTCAACGGC AAGATGCTGA CCGGCCGTGA TGCCGCGCAC AAGCGCATGG TTGAAATGCT CAACCGTGGC GAAGAGTTGC CGGTAGACCT GAAAGGCCGC TTCATCTACT ACGTCGGCCC GGTCGACCCG GTGGGTGACG AAGTGGTAGG CCCAGCCGGC CCGACCACTG CTACCCGTAT GGACAAGTTC ACTCGCCAGA TCCTTGAGCA GACTGGCCTG CTGGGCATGA TTGGCAAGTC CGAGCGTGGC CCGACCGCCA TCGAGGCGAT CAAGGACAAC AAGGCCGTGT ACCTGATGGC CGTTGGCGGC GCTGCCTACC TGGTCGCCCA GGCCATCCGC AAGTCGAAGG TACTGGCCTT CGCCGAGCTG GGCATGGAAG CGATCTACGA GTTCGAAGTC AAGGACATGC CGGTGACCGT CGCCGTGGAC AGCAACGGTG AATCGGTACA CATCACTGGC CCTGCCCTGT GGCAGAGCAA GATTGCCGAA AGCCTGGCCG TCGAAGTGAA GTAA
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Protein sequence | MTVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLREE SPAARDSIAQ ILINSRMCAT GHRPICQDTG IVTVFIRVGM DVRWDGATMS VDDMINEGVR RAYNLPENVL RASILADPAG ARKNTKDNTP AVIHYSIVPG DKVEVDVAAK GGGSENKSKM AMLNPSDSIV DWVLKTVPTM GAGWCPPGML GIGIGGTAEK AAVMAKEVLM ESIDIHELKA RGPQNRLEEI RLELFDKVNQ LGIGAQGLGG LTTVLDVKIM DYPTHAASLP VCMIPNCAAT RHAHFVLDGT GPAELEAPSL DAYPEIVWEA GPSARRVNLD DITPEEVASW KPGETILLNG KMLTGRDAAH KRMVEMLNRG EELPVDLKGR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TRQILEQTGL LGMIGKSERG PTAIEAIKDN KAVYLMAVGG AAYLVAQAIR KSKVLAFAEL GMEAIYEFEV KDMPVTVAVD SNGESVHITG PALWQSKIAE SLAVEVK
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