Gene PP_0888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0888 
Symbol 
ID1044774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1031293 
End bp1031853 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content64% 
IMG OID637144283 
Producttwo component transcriptional regulator, Fis family 
Protein accessionNP_743049 
Protein GI26987624 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG4567] Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.414248 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAG AAAACCAGGT CGAAAGCGAA GAGCTGCCGC ACCTGCTGCT GGTGGATGAC 
GATGCCACCT TCACCCGGGT CATGGCCCGG GCCATGAGCC GTCGCGGTTT CCGTGTGAGC
ACTGCCAGTT CTGCCGAAGA AGGCTTGATT CTGGCCCAGC AGGACCTGCC GGACTACGCC
ACGCTGGACC TGAAGATGGA TGGCGACTCC GGCCTGGTGC TGCTGCCCAA GCTGCTGGAA
CTGGACCCGG AAATGCGCGT GGTGATCCTG ACCGGGTACT CGAGCATTGC CACCGCAGTG
GAGGCGGTCA AGCGCGGTGC CTGCAACTAC CTGTGCAAGC CGGCTGACGC CGATGACGTG
TTGGCAGCAC TGCTGTCGGA GCACACCGAC CTGGATACCC TGGTGCCGGA AAACCCGATG
TCGGTCGATC GCCTGCAGTG GGAACACATC CAGCGCGTGC TGAACGAGCA TGAAGGCAAT
ATCTCGGCCA CCGCACGGGC GCTGGGCATG CACCGACGGA CGTTGCAGCG CAAGCTGCAG
AAGCGGCCGG TTCGGCGCTG A
 
Protein sequence
MSEENQVESE ELPHLLLVDD DATFTRVMAR AMSRRGFRVS TASSAEEGLI LAQQDLPDYA 
TLDLKMDGDS GLVLLPKLLE LDPEMRVVIL TGYSSIATAV EAVKRGACNY LCKPADADDV
LAALLSEHTD LDTLVPENPM SVDRLQWEHI QRVLNEHEGN ISATARALGM HRRTLQRKLQ
KRPVRR