| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0803 |
|---|
| Symbol | |
|---|
| ID | 1044646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 921841 |
|---|
| End bp | 923025 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637144197 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | NP_742964 |
|---|
| Protein GI | 26987539 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACC ATGAACTCCC GGCTTCCTAC CTGGACGGGC AGGACGACCA GGCGGTATTC
CGCGCCGGCC GCATCATCAC CCTCTGCGCG CTGATGCTGG CGGCGTTCCT GGCCTGGGCG
GCCTGGTTCG AGGTGACCGA GGTATCCACC GGCACAGGCA AGGTCATTCC AAGTTCGCGA
GAGCAGGTCA TTCAGTCGTT CGAGGGCGGT ATCGTCGCGC AGATGAGCGT GGCCGAAGGT
GACCTGGTCG AGCGCGGCCA GGTGCTGGCC CAGCTCGACC CGACCAAGAC GGCTTCCAGC
GTGGGTGAAA GCGAGGCCAA GTACCGCGCT GCCAGGGCCA GCCAGGCCCG CCTGCAGGCA
GAGGTGACCG GCAAGCCACT GACCTTCCCG GAGAGCCTGC GCGACTCTCC TGACCTGATC
GATGCCGAAA CCGCGTTGTA CCAGACCCGC CGCCGCGGCC TGGAACAGAC CCTGGCGGGT
ATTCAGGACT CGTTGCAGCT GGTGCGCAGC GAGCTGAAGA TCACCGAGAA CCTGGCAAAG
ATGGGTGCCT CCAGCCGGGT TGAAGTGATC CGCCTGAACC GCCAGCGTTC CGAGTTGGAA
CTCAAGGCCA ACGAGGCACG CTCGGACTAT CTGGTGCGCG CCCGGGAAGA ACTGGCCAAG
GCCAGCGCCG AAGCGGACGC CCTGTCGGAA GTGATCCGCG GACGCAGCGA CTCGCTCACC
CGCCTGACCC TGCGCTCGCC GGTGCGCGGC ATCGTGAAGG ACATCGAGGT CAACACCCTG
GGTGGCGTGG TGCAGCCCGG TGGCCAGGTG ATGAAGATCG TGCCGATGGA CGAACGCCTG
CTGATCGAAA CCCGCATCGC GCCACGGGAC ATCGCCTTCA TTCACCCCGA CCAGGCGGCC
AAGGTCAAGA TCAGTGCCTA TGACTACTCG GTATACGGCG GGCTGGATGG CAAGGTGGTA
GGCATCTCGC CGGATACCCT GCAGGACGAG GTCAAACCGG AAATCTACTA CTACCGCGTG
TTCATCCGCA CCGAACAGGA CAGCTTGCAA AACAAGGCCG GCAAGCGTTT TGCGATCGTG
CCAGGGATGA TTGCCACGGT GGATATCCGA ACGGGCGAGA AAACCATCCT CGATTACCTG
ATCAAGCCGC TGAACCGGGC CAAGGAGGCC CTGCGTGAAC GCTGA
|
|---|
| Protein sequence | MSNHELPASY LDGQDDQAVF RAGRIITLCA LMLAAFLAWA AWFEVTEVST GTGKVIPSSR
EQVIQSFEGG IVAQMSVAEG DLVERGQVLA QLDPTKTASS VGESEAKYRA ARASQARLQA
EVTGKPLTFP ESLRDSPDLI DAETALYQTR RRGLEQTLAG IQDSLQLVRS ELKITENLAK
MGASSRVEVI RLNRQRSELE LKANEARSDY LVRAREELAK ASAEADALSE VIRGRSDSLT
RLTLRSPVRG IVKDIEVNTL GGVVQPGGQV MKIVPMDERL LIETRIAPRD IAFIHPDQAA
KVKISAYDYS VYGGLDGKVV GISPDTLQDE VKPEIYYYRV FIRTEQDSLQ NKAGKRFAIV
PGMIATVDIR TGEKTILDYL IKPLNRAKEA LRER
|
|---|
| |