| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0572 |
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| Symbol | pbpC |
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| ID | 1044365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 668557 |
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| End bp | 670911 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637143955 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | NP_742735 |
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| Protein GI | 26987310 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAGCT TAGCGCGACC ACGCTGCCGA GCGGGCAGGT TGTTGCGTGC CACGCTGATC
AGTCTGCTGG TGCTCGGCGG CCTGTTCTGG CTGGCTGACC GTGTCTGGCC GTTGCCGCTG
CCGGGTGACG ACCTGGCCCG GGTAGTGCTG GCCGAAGACG GCACGCCGTT GTGGCGCTTT
GCCGATGCTG ATGGCGTGTG GCGCTACCCC GTAAGCCCTG AAGAGGTTTC GCCGCTTTAC
CTGCAGGCTT TGCTGACTTA CGAGGACCGT TGGTTCTACA ACCACCCAGG GGTCAACCCG
CTGGCATTGG CCCGGGCGGC CTGGCTGAAC CTGCGCGGCG GGCGTGTTGT GTCGGGCGGC
AGCACATTGT CGATGCAGGT GGCACGGCTG CTCGACCCGC ACGACCGTAC CCTGGTCGGC
AAACTGCGCC AGCTATGGCG CACCTTGCAG CTGGAATGGC ACTTGTCCAA GCGCGACATC
CTGCAGATCT ACCTGAACCG CGCACCTTTC GGCGGCACGC TTCAGGGCGT GGCGGCAGCC
AGCTGGGCGT ACCTGGGCAA GTCGCCCCTG CACCTGACAC CTGCCGAAGC GGCACTGCTG
GCCGTGCTGC CCCAGGCACC CAGCCGGCTG CGCCCGGACC GCCACCCCGA GCGTGCCCAG
CGTGCCCGGG ACAAGGTGCT GCAGCGCCTG GCTGAGTACC AGGTATGGCC GGCCCAGCAA
ATTCGCGAGG CGGCCGAGGA GCCGCTGGTG TTGGCGCCAC GCCAGGAGCC GGCCCTGGCG
CCATTGTTGG CCCGGCGCCT GAACAGCGCT GACAGTCCGC CGCTGATCCG TACCACGCTT
GACGCTGCGC TTCAGCGGCG CCTCGAAGAC TTGCTGCTGG GCTGGCGCGC ACGGCTGCCG
GAGCGTACCT CGGCCGCCAT TCTGGTGGTC GAGGCGCAGA GCATGGCGGT GCGCGCGTAC
CTGGGCTCGA TAGATTTGTC TGATGAGCGC CGCTTTGGCC ATGTCGACAT GGTGCGCTCG
TTACGTTCGC CCGGCTCCAC CCTCAAGCCG TTTCTTTACG GCATGGCGCT GGACGATGGC
CTGATCCATT CCGAATCGCT GTTGCAGGAT GTTCCACGAC GCTATGGCGA CTATCGCCCT
GGCAACTTCT CCATGGGGTT CAGCGGGCCG GTGTCGGCCA GCTCGGCGCT GGCCCTGTCG
CTCAACCTGC CCGCCGTGCA ATTGCTGGAG GCCTACGGCC CGAAACGCTT TGCCGCACAA
CTGCGCATGG CGGGCATGCC GTTGATACTG CCCCCCCTTG CCGAGCCCAA CCTGTCGTTG
ATCCTGGGCG GTGCCGGCAG CCGGCTGGAG GACCTGGTCG GCGGCTACGC GGCGCTGGCG
CGGGGTGGCA ACAGTGCGCA GGTGCGCTTG CAGCCACAGG CCCCCCTGGT GGAGCACCGG
TTGCTGTCAC CGGGGGCGGC GTGGATCATC CGGCGTATTC TCAGCGGCCA GGCGCGCCCG
GACCGCGACC CGCACGCCGA ACTGGTGCAG CGCCCGCTAC TGGCCTGGAA AACCGGCACC
AGCTACGGCT TTCGCGATGC CTGGTCGATT GGCGTGGGGC CGCGCTACCT GATCGGCGTA
TGGATTGGCC GCCCCGACGG TACACCGGTG CCTGGGCAGT TCGGCCTGGC GTCGGCGGCG
CCGCTGATGT TGCAGGTGCA CGATCTGTTG AGCAATCGCG ACAGCCAACG CGGCATCAGC
GTCCCGGTAG CGCCGGTACC TGCGAATATC GGCGTTGCAG CGATCTGTTG GCCGCTGGGT
CAGCCGATGA GCAAGCAGGA CACCAACTGT CGGCGTCAGC GCTTTGCATG GACCCTGGAC
GGCACCACGC CGCCAACCTT GCAGGCAGCC GACCAGCCGC TGGGCCTGGG TTTGCGCGAA
CAAGTATGGG TCAACGAGCG GGGCTTGCGG GTCGATGGCA GCTGCCCGGG CGCCAAGGCG
CGTGACATCG CCCTGTGGCC GGCGCCGCTG GAGCCTTGGC TACCCCGTGT CGAGCGGCGC
ATGGCGCGTT TGCCGGCCAT CGACCCGGCC TGCCCGCCGC AGGCGCCGGC CAGTGCACCA
CCGCTGTCGA TCGTCGGCGT GCGCCCAGGC GACAATCTGC GCCGCCCGGC CACCAGCACT
GAGCCGTTGC AATTGCAGGT ATCTGCCTTG GGTGGTGGTG GACGGCGCTG GTGGTTCCTC
AACGGCCAGC CGTTGGGTGA AACCCAGGGG CAGGACAGCT TGTTGCTGCG TTTGCCACAG
GTCGGGCAGG CCGAACTCAG CGCGCTGGAC GAAAGCGGTC AGACGGCGCG GGTGGCGTTC
CAGGTCAGTG AGTAG
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| Protein sequence | MPSLARPRCR AGRLLRATLI SLLVLGGLFW LADRVWPLPL PGDDLARVVL AEDGTPLWRF
ADADGVWRYP VSPEEVSPLY LQALLTYEDR WFYNHPGVNP LALARAAWLN LRGGRVVSGG
STLSMQVARL LDPHDRTLVG KLRQLWRTLQ LEWHLSKRDI LQIYLNRAPF GGTLQGVAAA
SWAYLGKSPL HLTPAEAALL AVLPQAPSRL RPDRHPERAQ RARDKVLQRL AEYQVWPAQQ
IREAAEEPLV LAPRQEPALA PLLARRLNSA DSPPLIRTTL DAALQRRLED LLLGWRARLP
ERTSAAILVV EAQSMAVRAY LGSIDLSDER RFGHVDMVRS LRSPGSTLKP FLYGMALDDG
LIHSESLLQD VPRRYGDYRP GNFSMGFSGP VSASSALALS LNLPAVQLLE AYGPKRFAAQ
LRMAGMPLIL PPLAEPNLSL ILGGAGSRLE DLVGGYAALA RGGNSAQVRL QPQAPLVEHR
LLSPGAAWII RRILSGQARP DRDPHAELVQ RPLLAWKTGT SYGFRDAWSI GVGPRYLIGV
WIGRPDGTPV PGQFGLASAA PLMLQVHDLL SNRDSQRGIS VPVAPVPANI GVAAICWPLG
QPMSKQDTNC RRQRFAWTLD GTTPPTLQAA DQPLGLGLRE QVWVNERGLR VDGSCPGAKA
RDIALWPAPL EPWLPRVERR MARLPAIDPA CPPQAPASAP PLSIVGVRPG DNLRRPATST
EPLQLQVSAL GGGGRRWWFL NGQPLGETQG QDSLLLRLPQ VGQAELSALD ESGQTARVAF
QVSE
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