Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0567 |
Symbol | speA |
ID | 1044357 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 658953 |
End bp | 660866 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637143950 |
Product | arginine decarboxylase |
Protein accession | NP_742730 |
Protein GI | 26987305 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.390352 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCGTAC GACGCACACG CAAAGACGAT GGTAGCCAAT GGACCGTGGC CGACAGCCGC AGTGTTTATG GTATCCGCCA TTGGGGCGCT GGCTATTTCG CCATCAATGA AGCCGGGCGC GTCGAAGTAC GCCCCAACGG CCCTCAAAGC GCTCCGATCG ACCTGTTCGA ACAGGTCGAC GAACTGCGCC AGAGCGGGTT GTCGCTGCCC TTGCTGGTAC GCTTCCCTGA CATTTTGCAG GACCGTGTGC GCCAGCTGAC CGGTGCCTTC GACGCCAACA TCGCGCGCCT GGAATACCAG AGCCAGTACA CCGCGCTGTA CCCGATCAAG GTCAACCAGC AGGAAGCGGT GGTGGAAAAC ATCATCGCCA CGCAAAACGT TTCCATCGGC CTGGAAGCCG GCTCCAAACC CGAGTTGCTG GCAGTGCTGG CGCTGGCGCC GAAGGGCGGC ACCATCGTCT GCAATGGCTA CAAGGACCGT GAGTTCATTC GCCTGGCGCT GATGGGTCAG AAGCTTGGCC ACAATGTGTT CATCGTCATC GAGAAAGAGT CGGAAGTGGC CCTGGTGATC GAAGAGGCCG CCGAGCTCAA GGTGAAACCA CAGGTTGGCC TGCGCGTTCG CCTGTCGTCG TTGGCCTCGA GCAAGTGGGC CGACACCGGT GGCGAGAAGT CCAAGTTCGG TTTGTCCGCC GCCCAGTTGC TTTCGGTGGT GCAGCGCTTC CGCGATGCGG GCCTGGATCA GGGCATCCGC CTGCTGCACT TCCACATGGG TTCGCAGATT GCCAACCTGG CTGACTACCA GCACGGTTTC AAGGAAGCCA TCCGTTATTA CGGCGAACTG CGTGCGCTGG GCCTGCCGGT CGACCACATC GACGTGGGTG GCGGCCTGGG TGTGGACTAC GACGGCACCC ACTCGCGCAA TGCCAGCTCG ATCAACTACG ACATGGACGA CTACGCCGGC GTGGTGGTGG GCATGCTCAA GGAGTTCTGC GACGCGCAGG GCTTGCCGCA CCCGCACATC TTCTCCGAGA GTGGCCGTTC GCTGACCGCG CACCACGCCA TGCTGGTGAT CCAGGTGACC GACGTCGAGA AACACAACGA CGACGTACCG ACCATCGAGA ACAAGGAAGC CCTGCCCGAG ACCGTGCAGT GGCTGGTCGA CCTGCTTGGC CCGACCGACA TCGAGATGGT CACCGAGACC TACTGGCGCG CCACCCACTA CATGGGTGAT GTGGCCGCGC AGTACGCCGA TGGCAAGCTG AGCCTGGGCG AGAAGGCCCT GGCCGAGCAG TGCTATTTCG CCGTGTGCCG CCGCCTGCAC AACTCGCTGA AAGCCCGCCA GCGCTCGCAC CGCCAGGTGC TGGACGAGCT GAACGACAAG CTGGCCGACA AGTACATCTG CAACTTCTCG GTGTTCCAGA GCCTGCCAGA CACCTGGGCC ATCGGCCAGG TCCTGCCGAT CATCCCGCTG CACCGCTTGG ACGAAGAGCC GATGCGGCGT GCGGTATTGC AGGACCTGAC TTGCGATTCC GACGGCAAGA TCAACCAGTA CGTTGACGAG CAGAGCATCG AAACCAGCAT GCCGGTGCAT GCGGTGAAGG AGGGTGAGGA TTACCTGCTG GGCGTGTTCC TGGTGGGTGC CTACCAGGAA ATCCTGGGTG ACATGCACAA CCTGTTCGGT GACACCGATT CGGTGAACAT CTACCAGAAT GCCGACGGCA GCGTGTACCA CGCCGGTATC GAAACCCACG ACACCATCGA AGACATGCTG CGCTACGTGC ACCTGTCGCC GGAAGAGTTG ATGACGCATT ACCGCGACAA GGTTGCCAGC GCCAAGATCA CTGCGCGTGA GCGGACCCAG TATCTGGATG CCTTGCGCCT GGGCTTGACC CGGTCTTCGT ACCTGTCGTC GTAA
|
Protein sequence | MSVRRTRKDD GSQWTVADSR SVYGIRHWGA GYFAINEAGR VEVRPNGPQS APIDLFEQVD ELRQSGLSLP LLVRFPDILQ DRVRQLTGAF DANIARLEYQ SQYTALYPIK VNQQEAVVEN IIATQNVSIG LEAGSKPELL AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI EKESEVALVI EEAAELKVKP QVGLRVRLSS LASSKWADTG GEKSKFGLSA AQLLSVVQRF RDAGLDQGIR LLHFHMGSQI ANLADYQHGF KEAIRYYGEL RALGLPVDHI DVGGGLGVDY DGTHSRNASS INYDMDDYAG VVVGMLKEFC DAQGLPHPHI FSESGRSLTA HHAMLVIQVT DVEKHNDDVP TIENKEALPE TVQWLVDLLG PTDIEMVTET YWRATHYMGD VAAQYADGKL SLGEKALAEQ CYFAVCRRLH NSLKARQRSH RQVLDELNDK LADKYICNFS VFQSLPDTWA IGQVLPIIPL HRLDEEPMRR AVLQDLTCDS DGKINQYVDE QSIETSMPVH AVKEGEDYLL GVFLVGAYQE ILGDMHNLFG DTDSVNIYQN ADGSVYHAGI ETHDTIEDML RYVHLSPEEL MTHYRDKVAS AKITARERTQ YLDALRLGLT RSSYLSS
|
| |