Gene PP_0454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0454 
SymbolrplC 
ID1044200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp551051 
End bp551686 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content57% 
IMG OID637143840 
Product50S ribosomal protein L3 
Protein accessionNP_742620 
Protein GI161378147 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00952841 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.09689e-07 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACTATTG GTGTAATCGG TCGCAAGTGC GGTATGACCC GCATTTTCAC CGAAGAAGGT 
GTCTCCATTC CGGTCACGGT CATTGAGATC GAGCCGAATC GCGTCACCCA GTTCAAAACT
GAAGAAACCG ATGGCTACCG TGCAGTGCAA GTCACTGTCG GCGAGCGTCG TGCTTCGCGT
GTGACTGCCG CTCAGGCAGG CCACTTCGCC AAGGCCAACG TTGCCGCTGG TCGCGGTGTT
TGGGAGTTCC GTCTTGAAGA AGGCGATTTC CAGGCTGGCG ATCTGATCAA AGCTGAACTC
TTCACTGCAG GCCAGCTGGT AGACGTTACT GGTCAGTCCA AAGGTAAAGG CTTCGCCGGT
ACCATCAAGC GCTGGAACTT CCGTGGTCAG GACAACACCC ACGGTAACTC CGTGTCGCAC
CGTGTTCCTG GTTCCATCGG CCAGTGCCAG ACTCCTGGTC GTGTGTTCAA GGGCAAGAAA
ATGTCCGGTC ACATGGGCGC CGAGCGCGTG ACTGTTCAGT CCCTGGAAGT AGTTCGCGTA
GACGCTGAAC GCAACCTGCT GCTGATCAAG GGTGCCGTAC CTGGCGCTAC TGGCGGCGAC
GTGGTTGTAC GTCCAGCTGT CAAGGCTCGC GGTTAA
 
Protein sequence
MTIGVIGRKC GMTRIFTEEG VSIPVTVIEI EPNRVTQFKT EETDGYRAVQ VTVGERRASR 
VTAAQAGHFA KANVAAGRGV WEFRLEEGDF QAGDLIKAEL FTAGQLVDVT GQSKGKGFAG
TIKRWNFRGQ DNTHGNSVSH RVPGSIGQCQ TPGRVFKGKK MSGHMGAERV TVQSLEVVRV
DAERNLLLIK GAVPGATGGD VVVRPAVKAR G