Gene PP_0410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0410 
SymboluhpA 
ID1044130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp498525 
End bp499154 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content62% 
IMG OID637143789 
ProductLuxR family two component transcriptional regulator 
Protein accessionNP_742576 
Protein GI26987151 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTCGAG TACTGGTGGC CGAAGACCAC ACCATTGTCC GTGAAGGCAT CAAGCAGTTG 
ATTGGCCTGG CCAAGGACAT GCAAGTGGCG GGGGAGGCCG GTAATGGCGA GCAGTTGCTC
GAAACCCTGC GCCACACACC GTGCGAGGTG GTACTGCTGG ACATCTCGAT GCCGGGTGTG
AACGGCCTGG AGGCGATCCC GCGTATCCGT GCGCTGCACG ATGCTCCAGC GATCCTGATG
TTGTCGATGC ACGATGAGGC ACAGATGGCG GCGCGGGCGC TGAAGGCCGG TGCGGCGGGC
TATGCCACCA AAGACAGTGA TCCGGCGTTG TTGTTGACAG CGATTCGTCG GGTGGCCGGT
GGCGGGCGTT ATATTGACCC GTCGCTGGCC GACCGCATGG TGTTCGAAGT AGGCCTCACC
GAATCCCGGC CGTTGCACAC ACTGCTCTCG GAGCGGGAAT TTTCGGTGTT CGAGCGCCTG
GCCCAGGGCG CCAACGTCAA CGACATCGCC CAGCAGTTGG CGCTGTCGAG CAAGACCATC
AGCACCCACA AGGCACGCCT GATGCAGAAG TTGAAAGTGA ACTCGCTGGC GGAGCTGGTG
AAGTACGCCA TGGAGCACAA GCTGATCTGA
 
Protein sequence
MIRVLVAEDH TIVREGIKQL IGLAKDMQVA GEAGNGEQLL ETLRHTPCEV VLLDISMPGV 
NGLEAIPRIR ALHDAPAILM LSMHDEAQMA ARALKAGAAG YATKDSDPAL LLTAIRRVAG
GGRYIDPSLA DRMVFEVGLT ESRPLHTLLS EREFSVFERL AQGANVNDIA QQLALSSKTI
STHKARLMQK LKVNSLAELV KYAMEHKLI