Gene PP_0322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0322 
SymbolglyA-1 
ID1044019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp386859 
End bp388112 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content63% 
IMG OID637143701 
Productserine hydroxymethyltransferase 
Protein accessionNP_742489 
Protein GI26987064 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0112] Glycine/serine hydroxymethyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.457346 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.86459e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTTCAGCA AGCAAGACCA GATCCAGGGT TACGACGATG CACTGCTGGC GGCGATGAAT 
GCCGAAGAAC AGCGCCAGGA AGATCACATC GAGCTGATCG CCTCGGAGAA CTACACCAGC
AAGCGCGTCA TGCAGGCCCA AGGCAGCGGC CTGACCAACA AGTACGCCGA AGGCTACCCT
GGCAAGCGTT ACTACGGTGG CTGCGAGCAC GTAGACAAGG TAGAAGCCCT GGCCATCGAG
CGCGCCAAGC AGCTGTTCGG TGCCGACTAC GCAAACGTCC AACCGCACTC CGGCTCGTCG
GCCAACGGCG CGGTCTACCT GGCCCTGCTG CAAGCCGGTG ACACCATCCT GGGCATGAGC
CTGGCCCACG GCGGTCACCT GACCCACGGC GCCAAGGTGT CGTCCTCGGG CAAACTGTAC
AACGCAGTCC AGTACGGCAT CGACACCAAC ACCGGCCTGA TCGACTACGA CGAAGTCGAG
CGCCTGGCGG TCGAGCACAA GCCGAAAATG ATCGTTGCCG GTTTCTCGGC CTACTCCAAG
ACCCTCGACT TCCCACGTTT CCGCGCCATC GCCGACAAGG TGGGCGCACT GCTGTTCGTC
GACATGGCCC ACGTTGCCGG CCTGGTTGCC GCTGGCCTGT ACCCGAACCC GATCCCGTTC
GCCGACGTGG TCACCACCAC TACCCACAAG ACCCTGCGCG GTCCGCGTGG CGGCCTGATC
CTGGCCAAGT CGAACGAAGA GATCGAGAAA AAGCTGAACG CCGCTGTATT CCCGGGTGCC
CAGGGTGGCC CGCTGATGCA CGTGATCGCT GCCAAGGCAG TGTGCTTCAA GGAAGCGCTG
GAGCCTGGAT TCAAGGCCTA CCAGCAGCAA GTGATCGAAA ACGCCCAGGC CATGGCCCAG
GTGTTCATCG ACCGTGGCTA CGATGTGGTT TCCGGTGGCA CCGACAACCA CCTGTTCCTG
GTCAGCCTGA TCCGTCAGGG CCTGACTGGC AAAGACGCCG ACGCCGCCCT GGGTCGTGCG
CATATCACCG TCAACAAGAA CGCCGTGCCG AACGACCCGC AGTCGCCGTT CGTCACTTCG
GGCCTGCGTA TCGGCACCCC GGCCGTCACC ACCCGCGGCT TCAAGGTCGC CCAGTGCGTG
GCCCTGGCTG GCTGGATTTG CGACATCCTC GACAACCTCG GTGACGCAGA CGTCGAAGCC
GATGTGGCGA AGAACGTCGC GGCCCTGTGC GCAGATTTCC CTGTCTACCG CTGA
 
Protein sequence
MFSKQDQIQG YDDALLAAMN AEEQRQEDHI ELIASENYTS KRVMQAQGSG LTNKYAEGYP 
GKRYYGGCEH VDKVEALAIE RAKQLFGADY ANVQPHSGSS ANGAVYLALL QAGDTILGMS
LAHGGHLTHG AKVSSSGKLY NAVQYGIDTN TGLIDYDEVE RLAVEHKPKM IVAGFSAYSK
TLDFPRFRAI ADKVGALLFV DMAHVAGLVA AGLYPNPIPF ADVVTTTTHK TLRGPRGGLI
LAKSNEEIEK KLNAAVFPGA QGGPLMHVIA AKAVCFKEAL EPGFKAYQQQ VIENAQAMAQ
VFIDRGYDVV SGGTDNHLFL VSLIRQGLTG KDADAALGRA HITVNKNAVP NDPQSPFVTS
GLRIGTPAVT TRGFKVAQCV ALAGWICDIL DNLGDADVEA DVAKNVAALC ADFPVYR