Gene PP_0315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0315 
Symbol 
ID1044010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp378120 
End bp379412 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content61% 
IMG OID637143694 
ProductRieske (2Fe-2S) domain protein 
Protein accessionNP_742482 
Protein GI26987057 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.276992 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000264373 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGACGTCA CCGCAACCCT GAGCCTGGGC GATCCACTTG AACCCGCACG CAAGGCTACC 
GCCGAGATGT TGCAGACCCG CGAGCGCACC TACTCGCTGC CCCAGCCTTT CTACACCGAC
GAGCGTCTGT TCCAGATCGA CATGCAGGAG ATCTTCCATA AAGAATGGTT GATCGCCGGC
ATGACCTGCG AGATCCCGGC CAAGGGCAAC TACATCACCC TGCAGATCGG CAAGAATCCG
ATCATTGTGG TGCGCGGTGC CGAAGGCAAG GTGCATGCCT TCCACAACGT CTGCCGCCAC
CGCGGTTCGC GCCTGTGCGT CAGCGAGAAA GGCAAGGTGG CCAAACTGGT GTGCCCATAT
CACCAGTGGA CTTACGAGCT GGACGGCCGC CTGCTGTTCG CCGGCACCGA GATGGGTGCT
GACTTCGATA TGAACCAGTA CGGCCTCAAG CCCGTGAACG TGAAGGTGGC CGGCGGCTAC
ATCTTCATCA GCCTGGCGGA AAACCCGCCT GCCATCGACG AGTTCCTGGC CACCCTGGAC
CATTACATGG AACCGTACGA CATGGAGAAC ACCAAGGTGG CGGTGCAAAC TACCTTGATG
GAAAAGGCCA ACTGGAAACT GGTGCTGGAA AACAACCGCG AGTGCTACCA CTGCAACGGT
TCGCACCCGG AACTGCTGCA AACCCTGCTG GAGTGGGACG ACACCAACGA CCCGCGCGCC
AGCCAGGAAT TCAAGGACCA TGTGGCCGCC TCCGCCGCTG CCTGGGAAGC CGAGAAGATC
CCGTACCTGC ACAAGAGCCA CGGCCTGCGT AACCGCATCG TGCGCATGCC GCTGCTCAAG
GGCACCGTGT CGATGACCAT GGACGGCAAG CAGGCCTGCC AGAAGCTGAT GGGTCGCATC
AAGAACCCAG ACCTTGGCTC GATGCGCATC CTGCACCTGC CGCACTCGTG GAACCACTGC
ATGGGCGACC ACATGATCGT GTTCACCGTG TGGCCGATCA GCGCCCAGGA AACCATGGTC
ACCACCAAGT GGCTGGTGCA CAAGGATGCC GTGGAAGGTG TGGACTACAA CCCCGAGAAC
ATGCGCAAGG TGTGGGACGC CACCAACGAC CAGGACCGCC GTCTGGCCGA AGAGAACCAG
CGTGGGATCA ACTCCACGGC GTACCAGCCG GGCCCGTATT CGAAGACTTA CGAGTTTGGT
GTGGTGAACT TCATTGACTG GTACAGCGGG CGCGTGCTGA ACAACCTGGG GGCAGAGCCG
GCGCCATACC TGAAAGAAGT GCAGGCGCAG TAG
 
Protein sequence
MDVTATLSLG DPLEPARKAT AEMLQTRERT YSLPQPFYTD ERLFQIDMQE IFHKEWLIAG 
MTCEIPAKGN YITLQIGKNP IIVVRGAEGK VHAFHNVCRH RGSRLCVSEK GKVAKLVCPY
HQWTYELDGR LLFAGTEMGA DFDMNQYGLK PVNVKVAGGY IFISLAENPP AIDEFLATLD
HYMEPYDMEN TKVAVQTTLM EKANWKLVLE NNRECYHCNG SHPELLQTLL EWDDTNDPRA
SQEFKDHVAA SAAAWEAEKI PYLHKSHGLR NRIVRMPLLK GTVSMTMDGK QACQKLMGRI
KNPDLGSMRI LHLPHSWNHC MGDHMIVFTV WPISAQETMV TTKWLVHKDA VEGVDYNPEN
MRKVWDATND QDRRLAEENQ RGINSTAYQP GPYSKTYEFG VVNFIDWYSG RVLNNLGAEP
APYLKEVQAQ