| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0237 |
|---|
| Symbol | ssuA |
|---|
| ID | 1043799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 291618 |
|---|
| End bp | 292583 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637143615 |
|---|
| Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
|---|
| Protein accession | NP_742405 |
|---|
| Protein GI | 26986980 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00268504 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACAG TCTTCTTGCG TCGTGGTCTG GTCGCCCTGT TTGCGGCGGC TGTGTCCTTC
GGCGCCATTA CCCAAGCCCA GGCCGAGAGC CTGCGTATCG GTTACCAGAA ATACGGCACC
TTGGTGCTGC TCAAGGCCAA GGGCACGCTG GAGAAGCGTC TGGCCGAGCA GGGAGTACAG
GTGCAATGGA CCGAATTCCC CGGCGGCCCG CAGCTGCTTG AAGGGCTGAA CGTCGGTTCC
ATCGATTTCG GCGTAACCGG CGAGACCCCT CCTGTGTTCG CTCAGGCCGC TGGCGCCGAC
CTGCTCTACG TGGCCTACGA GCCGCCAGCG CCGCACAGCG AAGCTATCCT GGTGCCCAAG
GGCTCGCCGA TCCAGTCGGT GAAGGACCTC AAGGGTAAAA AGGTCGTCCT CAACAAAGGC
TCCAACGTGC ACTACCTGCT GGTCCGCGCC CTGGAAGACG CCGGCCTCAA GTACAGCGAC
ATCCAGCCTG TCTACCTGCC GCCGGCCGAC GCCCGCGCCG CCTTCGAGCG CGGCAGCGTG
GATGCCTGGG TGATCTGGGA CCCCTACCAG GCCGCCGCCG AGCAGCAGCT GCAAGCGCGC
ACCCTGCGTG ACGGCAAGGG CCTGGTCGAC AACCACCAGT TCTACCTCGC CACCCGCAAC
TATGCGACAC AGCACCCAGC GGTGATCAAC ACCGTGATCG AGGAAGTGCG CGCTGTGGGT
GAGTGGTCCC AGGCCAACCC GCAGGAAGTG ACCGACCAGG TTGCCCCGCT GCTCGGCCTG
CCTGCCGGCA TCACCCTGAC CTCGGTCAAA CGCCAAGGCT ACGGCGCTGC GCCGCTGACC
CCAGAGGTGG TGGCCGCGCA ACAGAAGATC GCCGACACCT TCCAGGCGCT CAAGCTGATA
CCCAAGCCGC TGAGCATCAA GGACGTGATC TGGACACCCC CTGCCAAAGT CGCTAGCGCG
CCTTGA
|
|---|
| Protein sequence | MRTVFLRRGL VALFAAAVSF GAITQAQAES LRIGYQKYGT LVLLKAKGTL EKRLAEQGVQ
VQWTEFPGGP QLLEGLNVGS IDFGVTGETP PVFAQAAGAD LLYVAYEPPA PHSEAILVPK
GSPIQSVKDL KGKKVVLNKG SNVHYLLVRA LEDAGLKYSD IQPVYLPPAD ARAAFERGSV
DAWVIWDPYQ AAAEQQLQAR TLRDGKGLVD NHQFYLATRN YATQHPAVIN TVIEEVRAVG
EWSQANPQEV TDQVAPLLGL PAGITLTSVK RQGYGAAPLT PEVVAAQQKI ADTFQALKLI
PKPLSIKDVI WTPPAKVASA P
|
|---|
| |