| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0234 |
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| Symbol | oprE |
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| ID | 1043787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 288581 |
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| End bp | 289915 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637143612 |
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| Product | outer membrane porin |
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| Protein accession | NP_742402 |
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| Protein GI | 26986977 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0151017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000172994 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGTACAAGT CCAGCCTGGC TCTGGCCGTG GCACTGGGGG TTCTCGCCCA ACAAGCAGGC
GCTGCCGGTT TCGTTGAGGA CAGCAAGCTG TCGCTCAGCT CGCGCACCAT GTACTTCAAC
GATGACAACC GCGAAAGCGG TATTGACCAG AAAGAAAGTG GTCAGGGTTT CAAGCTCGAC
TACCTGTCTG GCTTCACTCA AGGCACCGTA GGTTTTGGTG TTGATGTTCA AGCGCTGTGG
GGCATTCACC TGGATGGTGG CCGTGGTAGC CGTCCAGATG CCAACAACAC GTTCTTCCCG
AGTGACTCCG ATGGTTCGGC AGTCCACGAC TGGGCACGCA TTGGTGGTAA CGCCAAGGCT
CGCTTCTCCA AAACCGAGGT CCACTACGGT AGCGCCCTGG CGCCTATGCT GCCGATCCTG
GTCTCCAACG ATGGCCGTCT GCTTCCGCAG ACCTTCGAGG GTGGCACCCT CCAGTCGAAG
GAAATCGACA ACCTGACCAT CAACGCGGGT CAACTGACCC ACGCCATGGG TCGTGCTTCG
AGCAACCGTA CCGGTCTCTC CGTTTCCGGC GCCTTCCGCG ACAGCAACAA GTTCCAGTTC
GCCGGCGGTG ATTACAAGCT CACCCCAGAC CTGACTCTGC AGTACTACTA CTCGAACCTG
GAAGACTTCT ACAAGCAGCA CTTCCTGGGT GCGACCCACG TATTCAAGAT TGCCGACAAC
CAGTCGTTCA AGACTGACCT GCGCTACTTC GACAGCAGCA GCGACGGCAA GAATGGCCAG
ACTGGCTATG CCTTCGACAA CAACGGTGGC TACGCGAAGA ACTCGGGCGA GGTCGACAAC
AAGACCTGGA GCGCCATGTT CACCTACACC CTGGGTGGCC ATGCGCTGAT GCTCGGTCAC
CAGCAAGTGG GTGATGATGG TGGTTTCGTC TGGCTGAACC AAGGTAGCGT CCGTAAAGAC
GGCTCCACTT CCTCTCTGGA AGGTAACGGC GGCGCGAGCT TCTACCTGTT CACCGATAGC
ATGATCAACC AGTTTGCCCG CGCCGGTGAG AATACAACCT TTGGTCAGTA CTCCTATGAC
TTTGCGGCTC TGGGTGTTCC AGGCCTGAAG GCTTCGGTGT CCTACCTGCG TGGTGATGAT
GTTCGCAACA GGTCGGGTGA CGGCACCTAC AACGAATGGG AACGTGACGC CCGCGTCGAC
TACACCCTTC AGGAAGGCAC TCTCAAAGGC CTGGGCTTCA GCCTGCGTCA AGGTGTCTAC
CGTGGTAGCG GCGAAAGCGC CCTGGACAAA GACCAGACTC GCTTCATCGT GAACTACACT
TACAACTTCC TGTAA
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| Protein sequence | MYKSSLALAV ALGVLAQQAG AAGFVEDSKL SLSSRTMYFN DDNRESGIDQ KESGQGFKLD
YLSGFTQGTV GFGVDVQALW GIHLDGGRGS RPDANNTFFP SDSDGSAVHD WARIGGNAKA
RFSKTEVHYG SALAPMLPIL VSNDGRLLPQ TFEGGTLQSK EIDNLTINAG QLTHAMGRAS
SNRTGLSVSG AFRDSNKFQF AGGDYKLTPD LTLQYYYSNL EDFYKQHFLG ATHVFKIADN
QSFKTDLRYF DSSSDGKNGQ TGYAFDNNGG YAKNSGEVDN KTWSAMFTYT LGGHALMLGH
QQVGDDGGFV WLNQGSVRKD GSTSSLEGNG GASFYLFTDS MINQFARAGE NTTFGQYSYD
FAALGVPGLK ASVSYLRGDD VRNRSGDGTY NEWERDARVD YTLQEGTLKG LGFSLRQGVY
RGSGESALDK DQTRFIVNYT YNFL
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