Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0213 |
Symbol | gabD |
ID | 1043755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 263249 |
End bp | 264691 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637143591 |
Product | succinate-semialdehyde dehydrogenase I |
Protein accession | NP_742381 |
Protein GI | 26986956 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.246043 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCTCA AAGACGCTCA GTTGTTCCGC CAGCAAGCCT ATATCAATGG TGAGTGGCTG GATGCGGACA ACGGCCAGAC CATCAAGGTG ACCAACCCGG CCACCGGCGA AGTCATCGGT ACCGTGCCGA AGATGGGTAC CGCGGAAACC CGCCGCGCCA TCGAAGCCGC CGACAAGGCC CTGCCGGCCT GGCGTGCCCT GACTGCGAAA GAGCGCTCGG CCAAGCTGCG TCGCTGGTTC GAACTGATGA TCGAGAACCA GGACGACCTG GCTCGCCTGA TGACCACCGA ACAGGGCAAG CCGCTGGCCG AAGCCAAGGG CGAAATCGCC TACGCTGCCT CGTTCATCGA GTGGTTCGCC GAAGAAGCCA AGCGCATCTA CGGTGACACC ATCCCGGGCC ACCAGCCAGA CAAGCGCCTG ATTGTCATCA AGCAGCCAAT CGGCGTTACC GCGGCCATCA CTCCGTGGAA CTTCCCGGCC GCCATGATCA CCCGTAAAGC CGGCCCGGCC CTGGCCGCTG GCTGCACCAT GGTCCTCAAG CCGGCTTCGC AAACCCCATA CTCCGCTCTG GCCCTGGTCG AGCTGGCCCA CCGTGCCGGC ATCCCGGCTG GCGTGCTGAG TGTGGTTACC GGCAGCGCCG GCGAAGTTGG CGGCGAACTG ACCGGCAACT CCCTGGTACG CAAGCTGTCC TTCACCGGCT CGACCGAAAT CGGTCGCCAG CTGATGGAAG AATGCGCCAA GGACATCAAG AAGGTTTCCC TGGAGCTGGG TGGCAACGCC CCGTTCATCG TGTTCGACGA CGCCGACCTG GACAAGGCGG TCGAGGGCGC GATCATCTCC AAGTACCGTA ACAACGGCCA GACCTGCGTC TGCGCCAACC GTATCTACGT GCAGGACGGC GTCTACGACG CGTTCGCCGA GAAGCTGGCC GCTGCAGTTG CCAAGCTGAA GATCGGTAAC GGCCTGGAAG AAGGCACCAC CACTGGCCCG CTGATCGATG GCAAGGCTGT CGCCAAGGTC CAGGAACACA TCGAGGACGC CGTCAGCAAA GGCGCCAAAG TGCTGTCCGG TGGCAAGCTG ATCGAAGGCA ACTTCTTCGA GCCGACCATC CTGGTTGACG TACCGAAGAC CGCTGCTGTC GCCAAGGAAG AGACGTTCGG CCCACTGGCG CCGCTGTTCC GCTTCAAAGA CGAAGCCGAA GTCATCGCCA TGTCCAACGA CACCGAGTTC GGGCTGGCCT CGTACTTCTA CGCCCGCGAC ATGAGCCGTG TGTTCCGTGT CGCCGAAGCC CTGGAATACG GCATGGTGGG TATCAACACC GGCCTGATCT CCAACGAAGT GGCGCCGTTC GGTGGTATCA AGGCTTCGGG CCTGGGCCGC GAAGGTTCCA AGTACGGTAT CGAGGACTAC CTCGAAATCA AATACCTGTG CATCAGCGTC TGA
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Protein sequence | MQLKDAQLFR QQAYINGEWL DADNGQTIKV TNPATGEVIG TVPKMGTAET RRAIEAADKA LPAWRALTAK ERSAKLRRWF ELMIENQDDL ARLMTTEQGK PLAEAKGEIA YAASFIEWFA EEAKRIYGDT IPGHQPDKRL IVIKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK PASQTPYSAL ALVELAHRAG IPAGVLSVVT GSAGEVGGEL TGNSLVRKLS FTGSTEIGRQ LMEECAKDIK KVSLELGGNA PFIVFDDADL DKAVEGAIIS KYRNNGQTCV CANRIYVQDG VYDAFAEKLA AAVAKLKIGN GLEEGTTTGP LIDGKAVAKV QEHIEDAVSK GAKVLSGGKL IEGNFFEPTI LVDVPKTAAV AKEETFGPLA PLFRFKDEAE VIAMSNDTEF GLASYFYARD MSRVFRVAEA LEYGMVGINT GLISNEVAPF GGIKASGLGR EGSKYGIEDY LEIKYLCISV
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