| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0186 |
|---|
| Symbol | hemC |
|---|
| ID | 1043712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 237981 |
|---|
| End bp | 238922 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637143564 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | NP_742355 |
|---|
| Protein GI | 26986930 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACTC GCGAAATCCG CATTGCCACC CGTAAAAGTG CTTTGGCCCT GTGGCAGGCC
GAATACGTCA AGGCCCGCCT CGAGCAGGCC CACACCGGCC TGCAGGTGAC CCTGGTACCC
ATGGTCAGTC GCGGTGACAA GTTGCTCGAC GCGCCGCTGG CAAAAATCGG CGGCAAGGGG
CTGTTCGTCA AGGAACTGGA AACCGCGCTG CTGGACAACG AAGCCGACAT CGCCGTGCAC
TCGATGAAAG ACGTGCCCAT GGACTTCCCC GAGGGCCTGG GCCTGTACTG CATCTGCGAG
CGTGAAGACC CGCGTGATGC CTTCGTTTCC AATACCTTTG ACAGCCTCGA AGCGCTGCCC
GCCGGCAGTA TCGTCGGTAC CTCAAGCCTG CGCCGTCAGG CCCAGTTACT GGCGCGCCGC
CCAGACCTGC AAATCCGCTT TCTGCGCGGC AACGTCAACA CCCGCCTGGC GAAGCTGGAT
GCCGGTGAGT ACGACGCCAT CATCCTCGCC GCGGCGGGCC TGATCCGTCT GGGCTTCGAA
GACCGCATCA CCTCCACCAT CAGCGTCGAT GACAGCCTGC CGGCAGGTGG TCAGGGCGCG
GTGGGCATCG AGTGCCGCAG TGCCGACGTT GAGATCCATG CACTGCTGGC GCCACTGCAC
CATGTCGACA CCGCTGACCG GGTGATCGCC GAGCGCGCGC TGAACAAACG CCTGAATGGT
GGCTGCCAAG TGCCGATCGC CTGCTACGCG GTACTTGAAG GTGACCAGCT GTGGCTGCGC
GGCCTGGTCG GCCAGCCTAG CGGCGGGACC TTGCTGGTGG CCGATGCCCG TGCACCCCGT
GCTGCTGCCG AGGCCCTGGG CGTACAGGTG GCCGAAGACC TGCTGGGGCA GGGCGCCGAG
GCCATTCTGA AGGAAGTCTA CGGCGAGGCC GGTCACCCGT GA
|
|---|
| Protein sequence | MSTREIRIAT RKSALALWQA EYVKARLEQA HTGLQVTLVP MVSRGDKLLD APLAKIGGKG
LFVKELETAL LDNEADIAVH SMKDVPMDFP EGLGLYCICE REDPRDAFVS NTFDSLEALP
AGSIVGTSSL RRQAQLLARR PDLQIRFLRG NVNTRLAKLD AGEYDAIILA AAGLIRLGFE
DRITSTISVD DSLPAGGQGA VGIECRSADV EIHALLAPLH HVDTADRVIA ERALNKRLNG
GCQVPIACYA VLEGDQLWLR GLVGQPSGGT LLVADARAPR AAAEALGVQV AEDLLGQGAE
AILKEVYGEA GHP
|
|---|
| |