Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0096 |
Symbol | prlC |
ID | 1043578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 101180 |
End bp | 103231 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637143468 |
Product | oligopeptidase A |
Protein accession | NP_742266 |
Protein GI | 26986841 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0339] Zn-dependent oligopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.32998 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00599775 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGACTGCGA ACAACCCGCT TCTGCAATCC CACGATCTGC CGCCCTTCTC GCAAATTCGT GCCGAACACG TGTTGCCGGC GATCGAAGCG ATCCTGGCCG ACAACCGTAA AGCCATTGCC GAGATCCTCG AAAAGCAGGG CAAGAACCCT ACATGGGCCG GCCTGGTGCT GGCCATGGAC GAACTGAACG ACCGCCTGGG CGCCGCCTGG AGCCCGGTCA GCCACCTCAA TGCGGTGTGC AACAGTGCCG AGTTGCGTGA GGCCTACGAG TCGTGCCTGC CGGCGTTGAG CGCCTACTCT ACCGAACTGG GCCAGAACCG CGCGCTGTTC GAAGCCTACC AGGCGCTGAT CGACAGCCCT GAGGCTGCCG GTTTCGACGT GGCGCAAAAG ACTATCCTCG AGCACGCCTT GCGTGACTTC CGCCTGTCGG GTATCGACCT GCCGGCGGAC AAGCAGCAGC GTTACGCCGA AGTGCAGAGC AAGCTCAGCG AGCTGGGCAG CCGTTTCTCC AATCAGCTGC TGGACGCCAC CCAGGCCTGG ACCAAGCATG TTACCGACGA AGCTGCGCTG GCCGGCCTGA CCGATTCGGC CAAGGCGCAG ATGGCCGCTG CAGCCCAGGC CAAGGGCCTG GACGGCTGGT TGATCACCCT TGAATTCCCC AGCTACTACG CGGTGATGAC CTACGCCAGC GACCGCGCCC TGCGCGAAGA GCTATACGCC GCCTACTGCA CCCGCGCCTC CGACCAGGGC CCGAATGCCG GCCAGTTCGA CAATGGCCCG GTGATGCGCG AAATCCTCGA CCTGCGCCAG GAGCTGGCCG AACTGCTGGG CTACAAGAAC TACGCCGAGC TGAGCCTGGC CACCAAGATG GCTGAGTCCA GCGACCAGGT GCTGAGCTTC CTGCGTGACT TGGCCAAGCG TTCCAAGCCG TTCGCCGCCC AGGATCTGCA ACAGCTCAAG GCCTACGCTG CCGAACAAGG CTGCCCCGAG CTGGCCAGCT GGGATGCCGG CTACTTTGGC GAGAAGCTGC GCGAGCAGCG CTACAGTGTG TCGCAGGAAG CCCTGCGCGC CTACTTCCCG ATCGACAAGG TGCTGGGCGG CCTGTTCAGC ATCGTGCAGC GCCTGTACGG CATCGAAATC GCCGAGCTCA AAGGTTTCGA CAGCTGGCAC CCGGACGTAC GCCTGTTCGA GATCAAGGAA AACGGTCAGC ACGTTGGCCG TTTCTTCTTC GACCTGTACG CCCGCGCCAA CAAGCGTGGC GGCGCCTGGA TGGACGGCGC CCGTGACCGT CGCCGCACCG CCGGCGGCCA GCTGCAAAGC CCGGTGGCCA ACCTGGTGTG CAACTTCACC CCGGCCGCGC CCCGCAAGCC CGCGCTGCTG ACCCACGATG AAGTCACCAC CCTGTTCCAC GAATTCGGTC ACGGCCTGCA CCACATGCTG ACCCGCATTG AGCATGCCGG CGTGTCCGGC ATCAACGGCG TGGCCTGGGA TGCGGTCGAG CTGCCCAGCC AGTTCATGGA AAACTGGTGC TGGGAGCCGG AAGGCCTGGC ACTGATTTCT GGTCACTACG AAACCGGCGC CGCCCTGCCC CAGGACCTGC TGGACAAGAT GCTGGCCGCA AAAAACTTCC AGTCGGGCAT GATGATGGTG CGCCAGTTGG AGTTCTCGCT GTTCGATTTC GAGCTGCACG CCAGCCATGG CGACGGCCGC AGCGTATTGC AGGTGCTCGA AGGTGTGCGT GACGAGGTGT CGGTCATGCG CCCGCCGGCT TACAACCGCT TCCCCAACAG CTTTGCGCAC ATTTTCGCGG GCGGTTACGC GGCGGGCTAC TACAGCTACA AGTGGGCCGA AGTGCTGTCG GCTGACGCCT TCTCGCGCTT CGAGGAAGAA GGCGTGCTGA ACGCCGAGAC CGGCCGCGCC TTCCGCGAGG CGATCCTGGC CCGTGGTGGT TCGCGCGAGC CGATGGAGCT GTTCGTCGAC TTCCGTGGCC GTGAGCCTTC CATCGATGCA TTGCTGCGCC ACAGTGGTCT CACCGAGGAC GCTGCAGCAT GA
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Protein sequence | MTANNPLLQS HDLPPFSQIR AEHVLPAIEA ILADNRKAIA EILEKQGKNP TWAGLVLAMD ELNDRLGAAW SPVSHLNAVC NSAELREAYE SCLPALSAYS TELGQNRALF EAYQALIDSP EAAGFDVAQK TILEHALRDF RLSGIDLPAD KQQRYAEVQS KLSELGSRFS NQLLDATQAW TKHVTDEAAL AGLTDSAKAQ MAAAAQAKGL DGWLITLEFP SYYAVMTYAS DRALREELYA AYCTRASDQG PNAGQFDNGP VMREILDLRQ ELAELLGYKN YAELSLATKM AESSDQVLSF LRDLAKRSKP FAAQDLQQLK AYAAEQGCPE LASWDAGYFG EKLREQRYSV SQEALRAYFP IDKVLGGLFS IVQRLYGIEI AELKGFDSWH PDVRLFEIKE NGQHVGRFFF DLYARANKRG GAWMDGARDR RRTAGGQLQS PVANLVCNFT PAAPRKPALL THDEVTTLFH EFGHGLHHML TRIEHAGVSG INGVAWDAVE LPSQFMENWC WEPEGLALIS GHYETGAALP QDLLDKMLAA KNFQSGMMMV RQLEFSLFDF ELHASHGDGR SVLQVLEGVR DEVSVMRPPA YNRFPNSFAH IFAGGYAAGY YSYKWAEVLS ADAFSRFEEE GVLNAETGRA FREAILARGG SREPMELFVD FRGREPSIDA LLRHSGLTED AAA
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