Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0082 |
Symbol | trpA |
ID | 1043563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 91569 |
End bp | 92378 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637143454 |
Product | tryptophan synthase subunit alpha |
Protein accession | NP_742252 |
Protein GI | 26986827 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0159] Tryptophan synthase alpha chain |
TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.49464 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00038137 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCGTC TTGAACAACG CTTCGCCGAG CTGAAGGCCG AAGGCCGCTC GGCACTGGTC ACCTTCGTCA CAGCTGGCGA CCCGGGCTAC GACGCCTCGT TGCAGATCCT CAAGGGCCTG CCGGCTGCTG GCGCCGACGT GATCGAGCTG GGCATGCCGT TCACCGACCC GATGGCCGAT GGCGTGGCCA TCCAGCTGGC CACCCTGCGC GCCCTTGAAG CTGGCCAGAC CTTGGTCAAG ACCCTGCAGA TGGTTCGCGA ATTCCGTGTG GATAACCAGA CCACGCCGAT CGTGCTGATG GGCTACTACA ACCCTATCCA CCGCTTTGGC GTGGACACGT TCGTGACTCA AGCCAAGGAA GCGGGCGTCG ATGGCCTGAT CATCGTCGAC CTTCCGCCAG AGCACGACGC CGAACTGGCT ACCCCGGCCC AGGCCGCAGG CATCGACTTC ATCCGCCTGA CCACCCCGAC CACCGACGAC GCGCGCCTGC CGCGCGTGCT GGAGCGCAGC TCCGGGTTCG TCTACTACGT GTCGGTGGCT GGTGTGACCG GTGCCGGTTC GGCGACCACC GAGCATGTGA CCGAAGCCAT TGCCCGCCTG CGCCGGCATA CCGATCTGCC GATCAGCGTT GGCTTCGGCA TTCGCACGCC GGAACAGGCT GCGAACATTG CCCGCTTGGC GGATGGTGTG GTGGTGGGCT CGGCACTGGT CGACAAGATC GCCCAGGCCA AAAGCGCCGA TCAGGCGGTG ACCGATGTAT TGAGCCTGTG CTCGGCATTG GCTGAAGGGG TGCGTGGCGC ACGCCGCTAA
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Protein sequence | MSRLEQRFAE LKAEGRSALV TFVTAGDPGY DASLQILKGL PAAGADVIEL GMPFTDPMAD GVAIQLATLR ALEAGQTLVK TLQMVREFRV DNQTTPIVLM GYYNPIHRFG VDTFVTQAKE AGVDGLIIVD LPPEHDAELA TPAQAAGIDF IRLTTPTTDD ARLPRVLERS SGFVYYVSVA GVTGAGSATT EHVTEAIARL RRHTDLPISV GFGIRTPEQA ANIARLADGV VVGSALVDKI AQAKSADQAV TDVLSLCSAL AEGVRGARR
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