Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0060 |
Symbol | glyS |
ID | 1043541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 69850 |
End bp | 71904 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637143432 |
Product | glycyl-tRNA synthetase subunit beta |
Protein accession | NP_742230 |
Protein GI | 26986805 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000538802 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGAGTGCTC AAGATTTCCT GGTAGAACTG GGCACCGAAG AGCTGCCACC CAAGGCCCTC GCCAGCCTTG GCGACGCCTT CCTGGCCGGT ATCGAAAAAG GCCTGCAGGC TGCTGGCCTG AACTACACCG GCAAGCAGGT GTACGCCGCG CCGCGTCGTC TGGCCGTGCT GATTCGCCAG CTGGACGTGC AGCAACCTGA CCGCAGCATC AACATCGACG GCCCGCCCCT GCAGGCTGCC TTCAACGCCG AAGGCGAGCC GACCCAGGCT GCGCTGGGCT TCGCCAAGAA GTGCGGTGTG GAACTGGCCG AGATCGACCA GAGCGGCCCC AAGCTGCGCT TCTCCCAGCA CATCCCGGGC AAGGCTACCG TTGGGCTGCT GCCGACCATC GTCGAAGATT CGCTGAACGA CCTGCCGATT CCCAAGCGCA TGCGCTGGGC GGCCAGCCGT GAAGAGTTCG TGCGCCCGAC CCAATGGCTG GTGATGCTGC TGGGCGATCA GGTGGTCGAT TGCACCATCC TGTCGCAGAA GGCCGGGCGT GAATCCCGTG GCCACCGCTT CCACCATCCG GAAAACGTGC TCATCACCAC CCCGGCCAAC TACGTCGAAG ACCTGCGCAA GGCCTACGTC CTGGCCGACT TCGCCGAGCG CCGCGAGCTG ATCAGCAAGC GTACCGCAGA GCTGGCCATG CAGCAGGAAG GCACGGCCAT CGTGCCACCG GCGCTGCTGG ACGAAGTGAC CGCTCTGGTC GAGTGGCCGG TGCCGCTGGT GTGCTCGTTC GAGGAGCGTT TCCTCGAGGT GCCGCAAGAA GCCCTGATCA CCACCATGCA GGACAACCAG AAGTACTTCT GCCTGCTGGA CAGCGAAGGC AAGCTGCTGC CGCGCTTCAT TACCGTGGCC AACGTCGAAA GCCGCGACCC GAAGCAGATC GTGCAAGGCA ACGAAAAAGT CGTGCGCCCG CGCCTGACCG ACGCCGAGTT CTTCTTCAAG CAGGACAAGA AGCAGCCACT GGAAACCTTC AACGAGCGCC TCAAGAACGT GGTGTTCCAG GCTCAGCTCG GCACCGTGTA CGACAAGGCC GAACGTGTTT CCAGGCTGGC CGCCTTCATT GCTCCGCTGA TCGGCGGCGA CGCCCAGCGC GCTGGCCGTG CCGGCCTGCT GTCGAAGTGC GACCTGGCCA CCGAGATGGT CGGCGAATTC CCTGAAATGC AGGGTGTTGC CGGTTACTAC TACGCGCTCA ACGACGGTGA GCCGGAAGAC GTAGCCCTGG CCCTGAACGA GCAGTACATG CCGCGCGGTG CAGGCGCCGA GCTGCCGCAG ACCCTGACCG GTGCTGCCGT GGCCATCGCC GACAAGCTCG ACACCCTGGT GGGTATCTTT GGCATCGGCA TGCTGCCTAC CGGCAGCAAG GACCCGTACG CCCTGCGCCG TGCTGCTCTG GGCGTGCTGC GTATCCTGAT CGAGAAGCAA CTGGACCTGG ACCTGACCGG CGCGGTTGAG TTTGCGGTCA AGCAGTTCGG CGCCAAGATC AAGGCCCCCG GCCTGGCCGA GCAAGTACTG GAGTTCATTT TCGACCGCCT GCGCGCGCGT TACGAAGACG AAGGCATCGA CGTCGCCACG TACCTGTCGG TACGCGCACT GCAGCCAGGC TCCGCCCTGG ACTTCGACCA GCGCGTACAA GCCGTGCAGG CGTTCCGCAA ACTGCCGGAA GCCGAGGCCC TGGCCGCGGT GAACAAGCGC GTGTCGAACC TGCTGAGCAA GGCCGAAGGA GCCATCGCCG AGCAGGTCGA GCCGAAGTAC TTCGACAATG CCAACGAGTT CTCCCTGTAC TCGGCCATCC AGCAGGCCGA CCAGGCCGTG CAACCGATGG CTGCAGCACG TCAGTACAGC GAATCGCTGG CCCGCCTGGC GGCCCTGCGT GACCCGGTCG ATGCCTTCTT CGAGGCGGTC ATGGTCAACG CCGAAGACGC CAAGGTACGT GCCAACCGTT ATGCCCTGCT CAGCCGTCTG CGCGGCCTGT TCCTGGGCGT GGCTGACATT TCGCTGCTGG GGTAA
|
Protein sequence | MSAQDFLVEL GTEELPPKAL ASLGDAFLAG IEKGLQAAGL NYTGKQVYAA PRRLAVLIRQ LDVQQPDRSI NIDGPPLQAA FNAEGEPTQA ALGFAKKCGV ELAEIDQSGP KLRFSQHIPG KATVGLLPTI VEDSLNDLPI PKRMRWAASR EEFVRPTQWL VMLLGDQVVD CTILSQKAGR ESRGHRFHHP ENVLITTPAN YVEDLRKAYV LADFAERREL ISKRTAELAM QQEGTAIVPP ALLDEVTALV EWPVPLVCSF EERFLEVPQE ALITTMQDNQ KYFCLLDSEG KLLPRFITVA NVESRDPKQI VQGNEKVVRP RLTDAEFFFK QDKKQPLETF NERLKNVVFQ AQLGTVYDKA ERVSRLAAFI APLIGGDAQR AGRAGLLSKC DLATEMVGEF PEMQGVAGYY YALNDGEPED VALALNEQYM PRGAGAELPQ TLTGAAVAIA DKLDTLVGIF GIGMLPTGSK DPYALRRAAL GVLRILIEKQ LDLDLTGAVE FAVKQFGAKI KAPGLAEQVL EFIFDRLRAR YEDEGIDVAT YLSVRALQPG SALDFDQRVQ AVQAFRKLPE AEALAAVNKR VSNLLSKAEG AIAEQVEPKY FDNANEFSLY SAIQQADQAV QPMAAARQYS ESLARLAALR DPVDAFFEAV MVNAEDAKVR ANRYALLSRL RGLFLGVADI SLLG
|
| |