| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0051 |
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| Symbol | |
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| ID | 1043532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 59316 |
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| End bp | 60608 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637143423 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_742221 |
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| Protein GI | 26986796 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000634616 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAG CCCATCCTCT CATCCTAGCT CTGGTTTCCT ACCTCGAGCA CGATGCCCTC
CCGACCATCG TGTTGGACAC CGACTACAAC ATCCTCGCCG CCAATGCGGC CTATCGCCGT
CAGTTTGGCC GGCATGATCA GGCCCCACTG GGCGAGAAGT GCCACAGGGT TTCGCACCAC
TACGCGGTGC CGTGCGACCA GGCTGGCGAA CATTGCCCGA TGCGCAAGGC GTGGGACAGC
AAGGTACCGG AGCGGGTATT GCACATTCAT CACACACCAC GCGGCCCGGA GCATGTGGAT
GTGGAGTTGC GGCCGATCCT GGATGAGCAG GGCAAGGTAG TGGCCTTTGT CGAACGCCTC
ACCACCATCA CCCTCGCCTC GGCGCAGCCT CAGGAGCAAG GGTTGGTCGG CCGCGCGCCA
ACCTTCAAGG CCGCGCTGGC CAGCCTGCAG CGTGCGGCAC CGGCGCAGAT CCCGGTGTTG
CTGCAGGGGG AGTCGGGGAC CGGCAAGGAG CTGTTCGCCC GTGCAGTGCA CATGGGCAGC
CCCAGGGCCA ACGGCCCACT GGTGGTGGTC GACTGCACCG GCCTGACCGA GTCGTTGTTC
GAGAGTGAAC TGTTCGGCTA TGAGAAGGGT GCGTTCACCG GGGCGAATCA GCGCAAGATC
GGCTTGGCCG AGGCGGCGCA TGGCGGCACC CTGTTCCTCG ATGAAATTGG TGAAGTGCCG
CTGGCGATGC AGGTGAAGTT GCTGCGCCTG ATAGAGTCCG GGAGTTTCCG TCCCGTGGGC
AGCCTGCGCA CTGTGCATTC GGATTTCCGC CTGATATCGG CCACCCATAA ACCACTTAAA
CAAATGGTCG CGGATGGCTC CTTCCGTGAA GACCTGTATT ACCGCATCAG CGGCTTCCCG
ATTCGTCTGC CTGCATTGCG CGAACGGGTG AAAGATCTGC CGCTGCTCGC ACAGAGCCTG
CTGCAGCGCA TGGCCGGCCA GCCGACGCCC AGGCTGAGTG AAGATGCCTT GCAGCAACTT
GCATTGCATC CGTTTCCGGG CAATATCCGC GAGCTGCGCA ACATTCTGGA ACGCGCGCGT
TTGTTTGCCG ATGACGGTGT GATCAGGCCA GAGCATTTAC CGGAAGACAC CGGGCTGACT
GGCGCGGCTA AAGGAAGCGG CCGTCGCAAT GACTTGGGTG AGCTGGCGCA GGCGCTGGAG
CAGTTCAAAG GCTCGCGCAG TGAACTGGCC AGTCATCTTG GCATGAGTGA ACGCACGCTG
TATCGCCGCT TGAAAGCGCT CGGGCTGAAC TGA
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| Protein sequence | MPEAHPLILA LVSYLEHDAL PTIVLDTDYN ILAANAAYRR QFGRHDQAPL GEKCHRVSHH
YAVPCDQAGE HCPMRKAWDS KVPERVLHIH HTPRGPEHVD VELRPILDEQ GKVVAFVERL
TTITLASAQP QEQGLVGRAP TFKAALASLQ RAAPAQIPVL LQGESGTGKE LFARAVHMGS
PRANGPLVVV DCTGLTESLF ESELFGYEKG AFTGANQRKI GLAEAAHGGT LFLDEIGEVP
LAMQVKLLRL IESGSFRPVG SLRTVHSDFR LISATHKPLK QMVADGSFRE DLYYRISGFP
IRLPALRERV KDLPLLAQSL LQRMAGQPTP RLSEDALQQL ALHPFPGNIR ELRNILERAR
LFADDGVIRP EHLPEDTGLT GAAKGSGRRN DLGELAQALE QFKGSRSELA SHLGMSERTL
YRRLKALGLN
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