Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0006 |
Symbol | yidC |
ID | 1043481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 6471 |
End bp | 8153 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637143378 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | NP_742176 |
Protein GI | 26986751 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000387778 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATATTA AACGCACGAT CCTGATCGCC GCGCTGGCAG TCGTGTCCTA CGTCATGGTC CTGAAGTGGA ACGATGACTA CGGCCAGGCT GCCCTGCCGA CTCAGAATAC TGCTGCCAGC ACTGTTGCTC CGGGCTTGCC CGATGGCGTG CCGGCCGGTA ACAACGGTGC CAGCGCCGAT GTACCGAGCG CCAACGCCGA ATCGAGCCCT GCCGAACTGG CACCGGTCGC ACTCAGCAAG GACCTGATCC GAGTCAAGAC CGACGTTCTG GAACTGGCTA TCGATCCGGT CGGTGGTGAC ATCGTCCAGC TGAACCTGCC GAAGTACCCA CGCCGTCAAG ACCACCCGAA CATTCCATTC CAGTTGTTCG ACAACGGTGG TGAGCGTGTT TACCTGGCAC AAAGCGGTCT GACCGGTACC GACGGCCCGG ATGCCCGCGC CAGCGGCCGT CCCCTGTATG CCGCCGAACA GAAGAGCTAC CAGCTGGCCG ATGGCCAGGA ACAACTGGTG GTAGACCTGA AGTTCAGTGA CAACGGTGTC AACTACATCA AGCGTTTCAG CTTCAAGCGC GGTGAGTACG ACCTGAATGT CAGCTACCTG ATCGACAACC AGAGCGGCCA GGCCTGGAAC GGCAACATGT TTGCCCAGCT CAAGCGTGAT GCCAGCGGCG ATCCGTCCTC CAGTACTGCC ACCGGCACCG CGACCTACCT GGGTGCTGCC CTGTGGACAG CTTCTGAGCC TTACAAAAAG GTCTCGATGA AGGACATCGA CAAAGGTAGT TTGAAAGAAA ATGTGTCCGG CGGCTGGGTT GCCTGGCTGC AGCACTACTT CGTGACCGCC TGGATTCCGG CCAAGTCGGA CAACAACGTT GTCCAGACCC GCAAGGATAG CCAGGGCAAC TACATCATCG GCTACACCGG CCCGGTTATC AGCGTACCGG CTGGCGGCAA GGTCGAAACC AGTGCCCTGC TGTACGCCGG CCCGAAGATC CAGTCCAAGC TGAAAGAGTT GTCCCCAGGC CTGGAATTGA CCGTCGACTA CGGCTTCCTG TGGTTCATCG CCCAGCCGAT CTTCTGGCTG CTGCAACATA TCCACAGCCT GCTGGGTAAC TGGGGCTGGT CGATCATCGT GCTGACCATG TTGATCAAAG GCCTGTTCTT CCCGCTGTCG GCTGCCAGCT ACCGCTCCAT GGCGCGTATG CGTGCCGTTG CACCTAAGCT CGCCGCACTC AAGGAACGCT TCGGTGACGA TCGCCAGAAG ATGTCCCAGG CGATGATGGA GCTTTACAAG AAAGAGAAGA TCAACCCACT GGGCGGCTGC CTGCCGATCC TGGTCCAGAT GCCGGTATTC CTGGCCCTGT ACTGGGTATT GCTGGAAAGC GTGGAAATGC GCCAGGCCCC GTGGATCCTG TGGATTACCG ACCTGTCGAT CAAGGATCCG TTCTTCATCC TGCCGATCAT CATGGGCGCC ACCATGTTCA TCCAGCAGCG CCTGAACCCG ACTCCGCCGG ATCCGATGCA GGCCAAGGTG ATGAAAATGA TGCCAATCAT CTTCACCTTC TTCTTCCTGT GGTTCCCTGC CGGTCTGGTG CTGTACTGGG TTGTGAACAA CTGCCTGTCG ATTTCGCAGC AGTGGTACAT CACTCGCCGT ATCGAAGCAG CTACCAAAAA AGCTGCTGCT TGA
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Protein sequence | MDIKRTILIA ALAVVSYVMV LKWNDDYGQA ALPTQNTAAS TVAPGLPDGV PAGNNGASAD VPSANAESSP AELAPVALSK DLIRVKTDVL ELAIDPVGGD IVQLNLPKYP RRQDHPNIPF QLFDNGGERV YLAQSGLTGT DGPDARASGR PLYAAEQKSY QLADGQEQLV VDLKFSDNGV NYIKRFSFKR GEYDLNVSYL IDNQSGQAWN GNMFAQLKRD ASGDPSSSTA TGTATYLGAA LWTASEPYKK VSMKDIDKGS LKENVSGGWV AWLQHYFVTA WIPAKSDNNV VQTRKDSQGN YIIGYTGPVI SVPAGGKVET SALLYAGPKI QSKLKELSPG LELTVDYGFL WFIAQPIFWL LQHIHSLLGN WGWSIIVLTM LIKGLFFPLS AASYRSMARM RAVAPKLAAL KERFGDDRQK MSQAMMELYK KEKINPLGGC LPILVQMPVF LALYWVLLES VEMRQAPWIL WITDLSIKDP FFILPIIMGA TMFIQQRLNP TPPDPMQAKV MKMMPIIFTF FFLWFPAGLV LYWVVNNCLS ISQQWYITRR IEAATKKAAA
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