Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0003 |
Symbol | gidB |
ID | 1043471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1839 |
End bp | 2489 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637143375 |
Product | 16S rRNA methyltransferase GidB |
Protein accession | NP_742173 |
Protein GI | 26986748 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.113806 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000164452 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAGTTCCC TGGTCACCCC TCAACACGCT GAAGAGTTGT CCACAGGTGC GCGCCAGCTT GGTGTCGAGC TGACTGCCGA GCAGCACGAG AAGCTGCTTG GCTACCTGGC TCTGTTGATC AAATGGAACA AAGCCTACAA CCTGACTGCT GTGCGCGACC CGGACGAGAT GGTTTCGCGT CACCTGCTCG ACAGCCTTAG CGTCATGTCT TTTATCCACA ACGATCGTGA TAACTGGCTG GATGTTGGCA GCGGCGGTGG CATGCCCGGC ATCCCGCTGG CTATCCTGCA TCCACACAAG CGCGTCACCG TGCTGGACGC CAATGGCAAG AAGACCCGTT TCCTGACTCA GGTGAAAATG GAACTCAAGC TGGACAACCT CACGGTTATC CACAGCCGGG TCGAGGCCTT CCAGCCGGCA CAACCGTTCG ACGGAATCAT CTCCCGCGCC TTCAGCAGCA TGGAGAACTT CACCAACTGG ACCCGCCACT TGGGCGACAC CGGGACGCAA TGGCTTGCAA TGAAGGGGCT GCATCCTGCC GATGAACTGG TAGCATTGCC CGCAGACTTC ACAGTGGAAA GCGAACAGGC CCTGACCGTT CCGGGTTGCC AGGGCCAGCG CCATCTGCTG ATACTGCGCC GCAAGGCATG A
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Protein sequence | MSSLVTPQHA EELSTGARQL GVELTAEQHE KLLGYLALLI KWNKAYNLTA VRDPDEMVSR HLLDSLSVMS FIHNDRDNWL DVGSGGGMPG IPLAILHPHK RVTVLDANGK KTRFLTQVKM ELKLDNLTVI HSRVEAFQPA QPFDGIISRA FSSMENFTNW TRHLGDTGTQ WLAMKGLHPA DELVALPADF TVESEQALTV PGCQGQRHLL ILRRKA
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