| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU3399 |
|---|
| Symbol | |
|---|
| ID | 2688177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 3738371 |
|---|
| End bp | 3740119 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637128094 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | NP_954439 |
|---|
| Protein GI | 39998488 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACGCA CGATAACATA CGGAATCCTG GCGCTGCTGG CCATGACGCT GCTGGTCGCC
TGCAGCAAGG GAAACGGCAG CCGGGAAGCC GGCGGCGAGG CCGGCCACGG GCCGGTGCAG
ATGACCGCCT GGTCGGACCG GACAGAGGTC TTTCTGGAGC ATCCCGAGCT TGAACCGGGC
AAAGGGGCGA CGCTCCTCAT CTATCTGACC CGCACGGCCG ACTGGAAGCC CCTGGCGTCA
TCGGAGGTGC ACCTGGTCAT AACCCCGCCC GCGGGAACCC CTCTGACGGT GGCCGCCAAA
GGGACCAAGC CGGGACTCTA TCGGGCCGAA GCAACCTTCC CCGCCAAAGG CGCCTACCGG
CTAACGGTGG TGATCGGCGG CTCCCAGGGG GAACAGATCG AACTCCCCTC TCTCCTGGTT
GGGGAAGGAC ATGACCACGG CGAGGGCGAG CACAAGGAGA CGGCCGCGAG TGACCGGAAG
GAGGGAACTC CCCACGACCG CGACGACCAC GGGGACCACG CCGCGGAGAC GAAGCAGGGC
GGAGGAAAAG AGCCCGCCCA TGCCGAACAT GACGACCACG ATGAGCATGC CGGGCATGGC
GGACACGACA GCCATGACGA CCATGAGGGA GAGCAGGCGC ACGACGAAAC CGGCAAAGCC
CATGCACACG CCGCCTCGGG AGCCGTCGGC GCCATCACCC TGACCAAGGA GCAGCAGTGG
GCCGTGGCCT TCGGCGTGGC CGAGCCGAGA CGAATGGATA TGGCCAGTGG CCTCACGGCG
GTCGGCGAAC TGGTGCCGGT GGCCACGGCC GAGGCGGTAG TGGCCGCTCC CCTGGCAGGG
GTCGTCTCCC CGACCCGCGC CCTTCCCTTC CCCGGCAAGC GGGTGGCAAA GGGCGAGGTG
ATCGCGGTGA TCGATCCTCC GGCAAGCCTT GGCGGAGGCA TGACCCAGCT GGCCGCCGAC
CATGCCCAGG CCATGAGCCG TCTCACCCTG GCCCAGGCCG AGTACGATCG GGCCAAGCGG
CTGGTGGAGG GAAAGATTGC CGCCCGCAAG CGGCTTGAGG AGGCCGAGGC GTCCCTGGAG
GCGGCCCGCG CCGTCGCAAC ACCCCTGGAG ACTGCCATGA AGAGCGTTCA GGGGGGGAGC
GGCGGACGGA TTACCGTGCG CGCGCCGGTC TCGGGCACCG TGGTCGAGGT CCCTGCCGTG
AACGGCAGCG GGGTAGCCCC TGGCCAGACC CTGGTCCGCA TCGTGGATAC CGGCCGGCTC
TGGCTCCGGG TGAACCTCCC GGCAACGGAC CTGGGCAAGG TTGGACGCCC CGCGGCCGCT
GGGACTACCT TCACCGTAAC GGGACTGCCG GGAGAATTCC ACACCAGCGG CCTCGTCTCC
GACGGGACGG TGGTGGATCC CCAGACCCGG ACTCTCCCGC TGGTCTTCGC CGTGGAAAAC
CGCAGCGGCA ACCTCAAGGC AGGTATGTTC GCCCGGGTCA CCATCCGGAC CGGTACGGCC
AAAGGTGTCC TGGCCGTACC GAAAGAGGCC CTCTTCGAGG ACGAAGGTCG CTGGTTCGCC
TTCGTCCAGA TCTCGGGAAT CACCTTTGAC CGCCGGGAGG TGCAGATCGG AACCGAAGAC
CAGGGGATGA TCCAGATCGT ATCGGGGCTC GACGAGCATG ACCGGCTGGT GGTGAAGGGG
GGCTACTACG TGAAGCTCGC TTCCCAGGGC GGGGCTACCG CCGACCCCCA TGCCGGTCAC
GGCCACTAA
|
|---|
| Protein sequence | MIRTITYGIL ALLAMTLLVA CSKGNGSREA GGEAGHGPVQ MTAWSDRTEV FLEHPELEPG
KGATLLIYLT RTADWKPLAS SEVHLVITPP AGTPLTVAAK GTKPGLYRAE ATFPAKGAYR
LTVVIGGSQG EQIELPSLLV GEGHDHGEGE HKETAASDRK EGTPHDRDDH GDHAAETKQG
GGKEPAHAEH DDHDEHAGHG GHDSHDDHEG EQAHDETGKA HAHAASGAVG AITLTKEQQW
AVAFGVAEPR RMDMASGLTA VGELVPVATA EAVVAAPLAG VVSPTRALPF PGKRVAKGEV
IAVIDPPASL GGGMTQLAAD HAQAMSRLTL AQAEYDRAKR LVEGKIAARK RLEEAEASLE
AARAVATPLE TAMKSVQGGS GGRITVRAPV SGTVVEVPAV NGSGVAPGQT LVRIVDTGRL
WLRVNLPATD LGKVGRPAAA GTTFTVTGLP GEFHTSGLVS DGTVVDPQTR TLPLVFAVEN
RSGNLKAGMF ARVTIRTGTA KGVLAVPKEA LFEDEGRWFA FVQISGITFD RREVQIGTED
QGMIQIVSGL DEHDRLVVKG GYYVKLASQG GATADPHAGH GH
|
|---|
| |