Gene GSU3174 details

Gene Information

• Locus tag: GSU3174
• Symbol: hcP-2
• ID: 2687694
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 3483262
• End bp: 3483747
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637127867
• Product: hcp protein
• Protein accession: NP_954215
• Protein GI: 39998264
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAATGC CCGCCCACAT GACCCTGACT GGAGAAAAAC AGGGAAAGAT CGACGGTTCC 
TGCGAACTGC AGGGGCGCGA AAACACTATC CAGCTTTACG AAATGAAGCA CGACATCCAC 
ATGCCGCGCA ATCCCCATGA CGGCCTGCCC ACCGGCAAGC GCGTCCATGG CCCCCTGTCG 
ATCGTCAAGA TGTTCGACAA GAGTTCGCCG AAACTCTATC AGGCCCTCTG CACCGGAGAG 
CACATGAAAA ACGTGCAGAT CAAGTGGTAC CGTATCAACA AACAAGGGCT GGAAGAGCAC 
TATTTCACCA CCACCCTTGA GGATGCCATC GTGGTCGAGA TGAAACCCTA CATGCCCATG 
ACGCTCCTTC CTGCGAACGA GCCCTACGGC CATATGGAAG AGGTGGCATT CTCCTACAAG 
AAGATCAAGT GGACCTGGGA GCCCAACGGT ATCGAGGCTG AGGATTCCTG GAGCGTGCCC 
AAGTAG 

 

Protein sequence

MAMPAHMTLT GEKQGKIDGS CELQGRENTI QLYEMKHDIH MPRNPHDGLP TGKRVHGPLS 
IVKMFDKSSP KLYQALCTGE HMKNVQIKWY RINKQGLEEH YFTTTLEDAI VVEMKPYMPM 
TLLPANEPYG HMEEVAFSYK KIKWTWEPNG IEAEDSWSVP K