Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU3108 |
Symbol | rho |
ID | 2688442 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 3410940 |
End bp | 3412187 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637127801 |
Product | transcription termination factor Rho |
Protein accession | NP_954149 |
Protein GI | 39998198 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAACCTGC AGGAGCTTAA AGGGAAAAAA ATCAACGAAC TGGCTGCCAT TGCCAAGGGG TTGAACATTG AGGGCGCGTC CAGTCTGCGC AAGCAGGACC TGATCTTCGC CATTCTCAAC GCCCAGACCG AAAAGAACGG CATGATCTTC GGCGAGGGGG TTCTGGAGTG CCTTCCCGAC GGCTTCGGCT TTCTGAGGGC GCCGGATTAC AACTACCTGC CGGGCCCCGA CGACATCTAC GTATCGCCGT CGCAGATCCG CCGCTTCAAC CTCCATACGG GCGATACCGT TTCGGGGCAG ATCCGTCCTC CCAAGGAGGG TGAGCGCTAT TTCGCTCTTC TCAAGGTGGA GACGGTCAAC TTCGAGCCCC CTGAGGTCGC CCGCGACAAG ATTCTGTTCG ACAACCTGAC TCCTCTCTAT CCCGACGAAA AGCTCAAACT CGAAACCGCG CCGGACAATA TGTCGATGCG CGTCATGGAG CTTGTCTCCC CTATCGGCAA GGGGCAACGG GGGCTCATCG TGGCGCCGCC GCGTACCGGC AAGACGATGC TCATTCAGAA CATCGCCAAT TCCATTGCCG AAAATCACCC CGAAGTCTAT CTGATCGTGC TGCTCATCGA CGAACGGCCC GAAGAGGTGA CCGACATGCA GCGCTCGGTC AAGGGGGAAG TAGTCTCCTC CACCTTTGAC GAACCGGCCA CCCGCCACGT GCAGGTGGCT GAGATGGTCA TCGAAAAGGC CAAGCGCCTG GTGGAGCACA AGCGCGACGT GGTGATTCTC CTCGACTCCA TAACCCGTCT TGCCCGGGCT TACAATACGG TGCTTCCTCC TTCCGGCAAA ATCCTCACCG GCGGGGTTGA CGCCAACGCC CTCCAGAAGC CCAAGCGCTT TTTCGGCGCT GCCCGCAATA TCGAAGAGGG GGGGTCTCTG ACCATCATCG CGTCGGCCCT GGTGGATACC GGCAGCAAGA TGGATGAGGT TATCTTCGAA GAGTTCAAGG GGACCGGAAA CATGGAGGTT CACCTGGACC GCAAACTGGT GGAGAAGCGG ACCTTCCCGG CCATCGACAT CAACAAGTCC GGCACCCGCA AGGAAGAGCT GCTGGTGGAG AAGAGCGCGC TCAACCGCAT CTGGATTCTG CGCAAGGTCC TCCATCCCAT GAACGTGGTC GACAGCATGG AGTTCCTCTT GGAGAAGCTC TCCGAGACCA AGGACAATCA GGCGTTTCTC GACTCCATGA GCAGGTAG
|
Protein sequence | MNLQELKGKK INELAAIAKG LNIEGASSLR KQDLIFAILN AQTEKNGMIF GEGVLECLPD GFGFLRAPDY NYLPGPDDIY VSPSQIRRFN LHTGDTVSGQ IRPPKEGERY FALLKVETVN FEPPEVARDK ILFDNLTPLY PDEKLKLETA PDNMSMRVME LVSPIGKGQR GLIVAPPRTG KTMLIQNIAN SIAENHPEVY LIVLLIDERP EEVTDMQRSV KGEVVSSTFD EPATRHVQVA EMVIEKAKRL VEHKRDVVIL LDSITRLARA YNTVLPPSGK ILTGGVDANA LQKPKRFFGA ARNIEEGGSL TIIASALVDT GSKMDEVIFE EFKGTGNMEV HLDRKLVEKR TFPAIDINKS GTRKEELLVE KSALNRIWIL RKVLHPMNVV DSMEFLLEKL SETKDNQAFL DSMSR
|
| |