| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2636 |
|---|
| Symbol | |
|---|
| ID | 2686238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 2905877 |
|---|
| End bp | 2907730 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637127326 |
|---|
| Product | alpha-amylase family protein |
|---|
| Protein accession | NP_953681 |
|---|
| Protein GI | 39997730 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAC CGCAATCGAT CAGGGACCTG GATCTGGAAC GCCTCTGCAA TCGCACCTTT
CACCCTTCCC CGTCAGCCTG GGAGGACGAG GTGCTCTACT TCCTGCTGCT CGACCGCTTT
TCCGACGGCA ACGAGACGGG CTACCGGGAC AACCGGGGAC GGCGCACGAA CCGGGGCGCC
ACCCCGCTGT ACCGCCCGGC CGATGCGGGC AACGCCATCG CCACCGAGCC CGAGGCAGCG
GCCTGGCGCG AGGCCGGCAC CCGCTGGTGC GGCGGGAACC TGAAGGGCCT CATGGACAAG
ATGGGGTATC TCCGGCGATT GGGGGTGACC GCGGTCTGGG TCAGCCCCCT GTTCAAGCAG
TGCTCATTTG TCCCCACCTA CCACGGTTAC GGTATCCAGA ACTTCCTGGA CGTGGACCCC
CACTTCGGCA CTCGCGACGA CCTGCGGGAA CTAGTCCGCG TGGCCCACGC CAACGGCATT
TACGTCATCC TCGACATCAT TCTCAATCAT GCGGGGAACG TGTTCGCCTA CGACCGGGGA
TACACCCCCT ACGACGGCGG CACCAGCTAC CCGGTGACGG GATTCCGCAC GGCCGACGGC
ACTCCGTCGC TTCCCTTCGG CCCCGTCGGT TCACCGGCCC CCGCCGAAGC CTGGCCCGAC
GGTGCGGTCT GGCCCCGGGA ACTGCAGGCG CCGGAGTGCT TCACGCGCAA AGGATACATC
CGGGATTGGG ACCGTTATCA CGAATACCTG GATGGTGATT TCTTCGACCT GAAGGATATT
CACCTGGGCG ACGGGGACGT GGATTCGTTC AGTCCGTCCC CGGCGCTCCT GGCACTTTGC
GAGGTGTACA AGTACTGGAT CGCCTACGCC GACCTGGACG GCTACCGGAT AGACACCGTA
AAGCATATGG GCCCCGGGGC CACCCGTTTT TTCGCCTCCA CCATCCACGA ATTCGCCCAG
AGGATCGGCA AGGAGAATTT CTATCTCATC GGTGAGATCA CCGGCGGCCG GGTCAATGCC
TTCGACACCC TGGAGACCAC CGGCCTCAAC GCCGCGCTGG GGGTGGACGA CATTCCGCTG
CGCCTGGAAG ATCTGGTGAA GGGAAAGGCC AACCCGGCCG ACTACTTCGA TCTCTTCCGC
AACTCCCTGC TGGTGCGCAA GGAGTCCCAC ATCTGGTTCC GCGACAAGGT GGTGACGGTT
ATCGACGACC ACGACCAGGT CTGCCGCGGC GCCAAGAAAG AGCGGTTCTG CGCCGGCGAT
CCCACGTGGC GCAAGCTGGT GCCAAACGCC CTGGCCCTCA ATGCCACCAC CCTCGGCATC
CCCTGCATCT ACTACGGTAC CGAGCAGGCC TTTGACGGCG AAGGGGGGGA CGACCGCTAC
CTGCGCGAAT GCATGTTCGG CGGCCCCTTC GGCGCCTTTC GCAGCCGCGG GGTCCACTTC
TTCGACGAGG ATAATCCGGT CTACCGGGAG TGTGCCAAGG TCCTTGCCCT GCGCCGTGAC
ATCATCGCCC TGCGCCGGGG GCGCCAGTAT CTGCGGGAGA TCTCCGGCGA TGGAGTGAAC
TTCGGGCTTC CCTACGTCAT CGGTGGCGAG ATCCGCTCCG TGGTGGCCTG GTCGCGGATC
TTCGACACCG AAGAGATAGT TCTCGCCATC AACACCGACC CTGACCATCC GCGCACCGCA
CTGGTGCTCG TGGACGGCTC CCTTCACCGG CCGGGGGACG TTTTCTTCTG CCGCTACTCG
ACGGACCCGG GTCAGGTCCG TCGAAGGGTG AGGGTGCGGG ATGCCGGTCC CGCCATTCGG
GCCGTAGAGC TTACGGTGCC GGCGGCCGGC TTCGTACTGT TCCAGAAGCG ATAA
|
|---|
| Protein sequence | MTAPQSIRDL DLERLCNRTF HPSPSAWEDE VLYFLLLDRF SDGNETGYRD NRGRRTNRGA
TPLYRPADAG NAIATEPEAA AWREAGTRWC GGNLKGLMDK MGYLRRLGVT AVWVSPLFKQ
CSFVPTYHGY GIQNFLDVDP HFGTRDDLRE LVRVAHANGI YVILDIILNH AGNVFAYDRG
YTPYDGGTSY PVTGFRTADG TPSLPFGPVG SPAPAEAWPD GAVWPRELQA PECFTRKGYI
RDWDRYHEYL DGDFFDLKDI HLGDGDVDSF SPSPALLALC EVYKYWIAYA DLDGYRIDTV
KHMGPGATRF FASTIHEFAQ RIGKENFYLI GEITGGRVNA FDTLETTGLN AALGVDDIPL
RLEDLVKGKA NPADYFDLFR NSLLVRKESH IWFRDKVVTV IDDHDQVCRG AKKERFCAGD
PTWRKLVPNA LALNATTLGI PCIYYGTEQA FDGEGGDDRY LRECMFGGPF GAFRSRGVHF
FDEDNPVYRE CAKVLALRRD IIALRRGRQY LREISGDGVN FGLPYVIGGE IRSVVAWSRI
FDTEEIVLAI NTDPDHPRTA LVLVDGSLHR PGDVFFCRYS TDPGQVRRRV RVRDAGPAIR
AVELTVPAAG FVLFQKR
|
|---|
| |