| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2472 |
|---|
| Symbol | vapC |
|---|
| ID | 2687877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 2710996 |
|---|
| End bp | 2711397 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637127162 |
|---|
| Product | virulence associated protein C |
|---|
| Protein accession | NP_953518 |
|---|
| Protein GI | 39997567 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1487] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00148493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTGC TTCTCGACAC CAATATCTGC ATTTACATCA TAAAGCAGCA GCCGGTTGCT
GTACTTGAGC GTTTCTTAGA GTACCAGGTT GGCGATATTG GCATTTCATC CATAACTCTC
TCGGAATTGC GCTACGGAGT TGCGAAGAGC ACCCATATGG AGAAAAACGC CAAGGCCCTC
GACGAATTCA TCATTCCTTT GGAATTGGTT TCTTATGATG AATCGGCGGC TCATGTCTAT
GGAGATATTC GAGCAGCTCT TGAAAAAGCT GGTACGCCCA TTGGCTCCAT GGATATGTTG
ATTGCCGCTC ACGCTGTATC GTTAGGAATC CCTCTGGTCA CTAATAACAC CCGCGAGTTT
TTACGGGTCC CTTCCCTCAA TATCATTGAT TGGACGGTTT AG
|
|---|
| Protein sequence | MKLLLDTNIC IYIIKQQPVA VLERFLEYQV GDIGISSITL SELRYGVAKS THMEKNAKAL
DEFIIPLELV SYDESAAHVY GDIRAALEKA GTPIGSMDML IAAHAVSLGI PLVTNNTREF
LRVPSLNIID WTV
|
|---|
| |