Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU1887 |
Symbol | rpoN |
ID | 2688508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 2065151 |
End bp | 2066596 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637126578 |
Product | RNA polymerase sigma-54 factor |
Protein accession | NP_952936 |
Protein GI | 39996985 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCATTG AAATGCGCCA ACAGATGAAG ATGACCCAGC AGCTGGTGAT GACGCCCCAG TTGCAGCAGG CCATCAAACT TCTCCAGCTG TCACGGCTGG AGCTTCAGGA TCTGGTCCGT CAGGAGATGG AAGAGAATCC GCTTCTGGAA GAGTCTCAGG AGGCTGAAGA GGTCAAGGAA CAGGATCTGG TCGAACTTTC CGAAAAGGAG GATGCTCCCG CTCCGGCTGA ACAGGATTTT CGCGAGGTCA CCACGGGGGA AGAGACCCGG GAGTCGGACT GGGACAGCTA CCTTGAGGGT TACAATTACA GTTCCGGCGA ACAGTACTAC GATGATGAAG ATCGTCCATC CTACGAAAAC ATTCTGACAC GCAAAGGGAC CCTTGCCGAT CATCTCATGT GGCAGCTCAA TATGACCAAG TTGAGCGATG AAGAGGCACG GGCCAGCGCG GAGATTATCG GCAACATAGA TGAAGACGGC TACCTGCGCG CTACGGTTGA GGAAGTCGCC CTGGCATGCT CCGTAAGCGA ATCCGTGGCG GAATCGGCTT TGAAGAAGAT CCAGGAGTTT GACCCCATGG GGGTGGGGGC TCGTAGCCTG AGGGAATGTC TCCTGATCCA GGTGGAGCAG CTCGGCATGG CGGGGAGCGT TGTGGACGGC ATCCTCCGCA ATCACCTCCA CGACTTGGAG ACCCGCAAGT ACAAACAAAT TGCCAAGTCT CTCGGGGTCG ACGTGGACAG CATCCTGATG GCCGCCAAGA TTATCGCCGG CCTGGACCCG AAACCGGGCC GAGTCTATGG CTCCGAAGAT GTCCACTACA TTTCGGCCGA TATATTTGTC TATAAAATCG CTGACGACTA TGTCGTCGTG CTTAATGACG AAGGCCTTCC CAATCTGAGA ATCAGCCCCT TTTATGCCGG CGAGATCAAA AACGGTGCCG CCGTCGACGC CAAGGCCGAG GAGTACATCA ACGAAAAGTC CCGCTCCGCC ATGTGGCTCA TCAAGAGCAT CCACCAGCGG CAGAGAACCA TCTACAAGGT TGCGAAGAGC ATTGTGAAGT TCCAGCGCGA GTTTCTCGAC CGCGGGATAG AACACCTTCG CCCCCTGGTG CTCAGGGACG TAGCCGAGGA TATCGGCATG CACGAGTCGA CCATCAGCCG CGTCACCACC AACAAGTACA TGCAAACCCC CCAGGGGCTC TTCGAGATGA AGTACTTTTT CAATAGCGGC ATTTCAACTA CCGAAGGAGA TTTCATCGCT TCAGAGAGCG TCAAGAACAA GATCAAGGAA ATCGTTGATT CCGAGGATCC CCGAAAGCCG TACAGCGACC AGCGTATCGC CGAATTGCTT TCGGCGCACA CCATCAACAT CGCCCGACGA ACCGTAACGA AATACCGCGA GATGTTGAAA ATCGGCTCGT CATCCGAGCG CAAACGTCAT TTTTGA
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Protein sequence | MAIEMRQQMK MTQQLVMTPQ LQQAIKLLQL SRLELQDLVR QEMEENPLLE ESQEAEEVKE QDLVELSEKE DAPAPAEQDF REVTTGEETR ESDWDSYLEG YNYSSGEQYY DDEDRPSYEN ILTRKGTLAD HLMWQLNMTK LSDEEARASA EIIGNIDEDG YLRATVEEVA LACSVSESVA ESALKKIQEF DPMGVGARSL RECLLIQVEQ LGMAGSVVDG ILRNHLHDLE TRKYKQIAKS LGVDVDSILM AAKIIAGLDP KPGRVYGSED VHYISADIFV YKIADDYVVV LNDEGLPNLR ISPFYAGEIK NGAAVDAKAE EYINEKSRSA MWLIKSIHQR QRTIYKVAKS IVKFQREFLD RGIEHLRPLV LRDVAEDIGM HESTISRVTT NKYMQTPQGL FEMKYFFNSG ISTTEGDFIA SESVKNKIKE IVDSEDPRKP YSDQRIAELL SAHTINIARR TVTKYREMLK IGSSSERKRH F
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