Gene GSU1764 details

Gene Information

• Locus tag: GSU1764
• Symbol: dxs-2
• ID: 2686761
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: -
• Start bp: 1926084
• End bp: 1927964
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637126444
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: NP_952814
• Protein GI: 39996863
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0479282
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTA TTCTCGACAG GGTAGATTCT CCCTCTGACC TGAAGGGGCT CACTACGGCC 
GAGTTGGGCA TCCTTGCAGA GGAGATACGG CAGGAAATCA TAACCGTCTG CTCCCGCAAC 
GGCGGTCACC TGGCGCCGAG TCTCGGCGTG GTGGAGCTTA CTCTGGCCCT GCATAGGGTA 
TTCACCTCGC CTGAGGATAA AATCGTCTGG GACGTGGGAC ACCAAGCCTA TGCCCACAAA 
CTCGTGACCG GCCGCCGGGA CCGGTTCGCA ACCCTGCGGA CCCTTGGAGG GATCAGCGGC 
TTCCTCAAGC GGGCCGAGTC GCCCCACGAC GTGTTTGACG CCGGCCATGC CTCCACTTCC 
ATATCCGCCG CCCTGGGGCT TGCGGCGGCC CGTGACCTCG CCGGCAGGAA CAACAAGGTA 
GTGGCGGTCA TCGGCGACGG CTCCATGACC GGCGGTATCG CCTATGAAGG GCTCAACCAC 
GCGGGGCACC TGAACCGTGA TCTGGTCGTG GTTCTGAACG ACAACGAGAT GTCCATCGCC 
GAGAACGTGG GCGCTCTGTC CAATTTTCTG AGCCGTACCG TTACCAGCGA GTTCGTTCAT 
ACCCTGAAGA AGGATGTGGA AACCTTTCTC GGGGGGCTCG ACCGGATCGG CCGGAACGTC 
CTCAAGGTGG CCAAACGGGC GGAAGAGTCT CTCAAGGGAC TCTTTACGCC GGGAATGCTC 
TTCGAAGCCT TCGGGTTCGA GTATATCGGC CCCATCGACG GACACGACAT CGGCCGCCTC 
ACGGAAACCT TCGAAAAGGT CAAGCGGTTC GATGATGCGG TCCTGATCCA CGTTCTGACC 
AAAAAGGGAA AGGGGTTTGC CCCGGCCGAA GCCAAACCGT CGCTTTTCCA CGGGGTCGGC 
CCCTTTGACC CTGTCAGCGG CGAAATCGTA AAAGGAAAGG GCGGGGCCAC CTCCTACACG 
GGAGTCTTCG GCCAGGCCCT GACGCGGATT GCCGATGAAG ACGAGCGGGT AGTCGCCATC 
ACTGCGGCCA TGCCCGACGG TACGGGCCTC GGCTCCTTCT CGGCTCGCCA CCCCGGTCGC 
TTCTTCGATG TGGGGATCGC GGAGCAGCAT GGCGTAACCT TTGCCGCCGG CCTCGCGGCC 
GAGGGGTACC GGCCGGTTTT CGCCATTTAC TCTTCGTTCC TGCAGCGGGC CTATGACCAG 
CTTTTCCACG ATGTCTGCCT CATGAACCTG CCGGTGACCT TTGCCATTGA CCGGTCCGGG 
GTCGTGGGAA GCGATGGTCC GACCCACCAC GGGCTCTTTG ACCTGTCCTA CCTGCGTACC 
CTGCCCAACA TGGTCGTAAT GGCCCCCAAG GATGAAAACG AGCTGCAACA CATGCTCAAG 
ACCGCCATCG ACCATAATGG CCCCGCAGCG GTCCGCTATC CCCGCGGCAA TGGGCTCGGC 
GTGCCCCTTG ACCAGTCGCT GGCTCCGATC CCCCTGGGCA CGTCGGAAGT GCTGCGTGCC 
GGCAGCGGCA CCTGTGTGGT TCTGGCGGTC GGCGCCATGG TCGGGCCCGC CCTCGAAGCG 
GCTAACACCC TTGAAGGCGA GGGCATTGAC CTGACCGTGG TCAACGTCCG TTTTGTGAAA 
CCCCTCGACC GGGAGCTTAT CCTGTCGTAC GTCGGCCGGG CCGGAACGCT GGTGACTATT 
GAGGAAAACG TCCTTCAAGG GGGCTTTGGT TCAGCCGTGC TCGAACTGCT TGCCGATGAA 
GGAGTAGGAG GCGTTGCCGT GCACCGGTTC GGCTACCCCG ACCGGTATGT GGAGCAGGGT 
GAACAACATG AACTGCGGTC ACGCTACGGC CTCGATGCCG AGGGGATTGC CGGACGGATC 
AGGACGTTGT CCGCGCGCTA G 

 

Protein sequence

MSRILDRVDS PSDLKGLTTA ELGILAEEIR QEIITVCSRN GGHLAPSLGV VELTLALHRV 
FTSPEDKIVW DVGHQAYAHK LVTGRRDRFA TLRTLGGISG FLKRAESPHD VFDAGHASTS 
ISAALGLAAA RDLAGRNNKV VAVIGDGSMT GGIAYEGLNH AGHLNRDLVV VLNDNEMSIA 
ENVGALSNFL SRTVTSEFVH TLKKDVETFL GGLDRIGRNV LKVAKRAEES LKGLFTPGML 
FEAFGFEYIG PIDGHDIGRL TETFEKVKRF DDAVLIHVLT KKGKGFAPAE AKPSLFHGVG 
PFDPVSGEIV KGKGGATSYT GVFGQALTRI ADEDERVVAI TAAMPDGTGL GSFSARHPGR 
FFDVGIAEQH GVTFAAGLAA EGYRPVFAIY SSFLQRAYDQ LFHDVCLMNL PVTFAIDRSG 
VVGSDGPTHH GLFDLSYLRT LPNMVVMAPK DENELQHMLK TAIDHNGPAA VRYPRGNGLG 
VPLDQSLAPI PLGTSEVLRA GSGTCVVLAV GAMVGPALEA ANTLEGEGID LTVVNVRFVK 
PLDRELILSY VGRAGTLVTI EENVLQGGFG SAVLELLADE GVGGVAVHRF GYPDRYVEQG 
EQHELRSRYG LDAEGIAGRI RTLSAR