Gene GSU1688 details

Gene Information

• Locus tag: GSU1688
• Symbol: ribD
• ID: 2685605
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 1847264
• End bp: 1848373
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637126369
• Product: riboflavin biosynthesis protein RibD
• Protein accession: NP_952739
• Protein GI: 39996788
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATCTT TTCATGAAAA CATGATGCGG CGTGCCCTTT CTCTCGCCCG GAAAGGCATT 
GGCAAGACAT CCCCCAACCC TGTGGTAGGG TGTGTGATCG TGCGTGAGGG TGTCGTGGTC 
GGAGAGGGGT GGCACCGCAA GGCCGGCACC CCCCATGCGG AGGTCCACGC GTTGCGCGAA 
GCCGGCCCGC TGGCTCGCGG AGCTGATGTC TATGTGACGC TCGAACCATG CTCCCACTTC 
GGCCGCACCC CCCCGTGCGC AGATGCCCTG GTTGCTGCGG GAGTAGCACG TGTCTTCGTG 
GGCATGGTCG ATCCGAACCC CACGGTCTGC GGCAAGGGGA TCACCCGCCT CGAAGCGGTA 
GGTATTCAGG TAATTACCGG CGTGTTGGGT AAGGAGTGTC GGCTGATCAA TGAACCCTTT 
GTGAAGCACG TGTCAACAGG GCTTCCTTTT CTCACCCTCA AGAGCGCTCT TACCCTTGAT 
GGGAAGACAG CTACTGCGCT TGGTGACTCA CGCTGGATAA CTAACGATAA ATCAAGACGA 
TATGTGCATC AGCTTCGAGC AGAGGTAGAT GCCGTTATGG TGGGAGTCGG AACCCTGCTG 
GCCGATAACC CCGAACTAAC CGTGCGCCAC GTGAAGGGGA AAAATCCTCT CAGAATCATT 
GTGGACAGCA GCCTAAAGAT ACCAAATGAG TCGCGGGTGC TGGGAGACGA CTTGGCCCGC 
GGCACCATCA TCGCGACCAC GTCGGATGAT CAGGAGCGAA TCGGGTTTCT GGAGACGCGG 
GGAGCGCAGG TCATCCGTTG CGCATCCGAC AAAGGTCGCG TGGACCTGCG GGATCTCATG 
CAGCGCCTCG GCGCCAAGGG AATCCAGTCG ATCCTGCTGG AGGGGGGGAG CGAACTGGCT 
GGTGCGGCTC TCCGTCAAGG ACTGATCGAC AAGTTCATTC TCTTTTACGC CCCCATAGTT 
CTGGGCGGTG CCGCCGGCAT CGGGTTGTTC GGCGGAAAAT CGGTGGAGCG CATGGGGCGG 
GCATTTCGCC TGGAAACGGC GCGGGTGCGG CGTTTCGGCG GCGACGTCAT GATCGAGGCC 
TATCCGGAGG AAGCATGTTC ACTGGATTGA 

 

Protein sequence

MTSFHENMMR RALSLARKGI GKTSPNPVVG CVIVREGVVV GEGWHRKAGT PHAEVHALRE 
AGPLARGADV YVTLEPCSHF GRTPPCADAL VAAGVARVFV GMVDPNPTVC GKGITRLEAV 
GIQVITGVLG KECRLINEPF VKHVSTGLPF LTLKSALTLD GKTATALGDS RWITNDKSRR 
YVHQLRAEVD AVMVGVGTLL ADNPELTVRH VKGKNPLRII VDSSLKIPNE SRVLGDDLAR 
GTIIATTSDD QERIGFLETR GAQVIRCASD KGRVDLRDLM QRLGAKGIQS ILLEGGSELA 
GAALRQGLID KFILFYAPIV LGGAAGIGLF GGKSVERMGR AFRLETARVR RFGGDVMIEA 
YPEEACSLD