| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1581 |
|---|
| Symbol | |
|---|
| ID | 2685520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1732220 |
|---|
| End bp | 1734862 |
|---|
| Gene Length | 2643 bp |
|---|
| Protein Length | 880 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637126261 |
|---|
| Product | polyA polymerase family protein |
|---|
| Protein accession | NP_952632 |
|---|
| Protein GI | 39996681 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase
[COG0618] Exopolyphosphatase-related proteins
[COG3448] CBS-domain-containing membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.48144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTTA TTACCACCCA CGTGAACGCC GATTTCGATT GTCTCGGCGC CATGGTCGCG
GCCAGTAAAC TCTACCCCGA CGCCCTTATG GTCTTCTCCG GTTCCCAGGA AAAGAGCATG
AGGGATCTCT TCCTCAAGAC AACCGGCTAC GCACTCCCCT TTACCCGGCT CAGGGATGTG
GATTTTTCCG ATATTACGCG ACTGGTTCTC GTAGATTGCC AGCATACCTC GCGTATCGGC
CGCTTTGCGG AGGTTGCACG TCGACCCGGC GTCGAGGTCC ATATCTACGA CCACCATCCC
GGCTCCAGCG GCGACATCAG GCCGAGCGGC GGAGAGATCC GCGATTGCGG CTCGTCCACG
ACTATTCTGA CCCGAAAGCT CATGGAGCAG GGCATCGAGG TGACCGCTGT CGAGGCTACC
CTCATGATGC TGGGCATCTA TGAAGACACG GGCAACTTGA CCTTTCCTTC CACCACCCCC
GAAGACTATG CCGCAGCATC CTGGCTCCTG GAGCGGGGAG CCAACCTGAA TATCGTGTCG
GATTTCGTCT CTCAGGAGCT GACTGCCGAG CAGGTTGCGC TTCTGAACGA TCTGCTGAAG
TCCCTGCGCA GTACGCCGGT GAACGGGGTC GACATCGCCG TTGCCCATGC CACTCTCGAC
CACTATGTGG GCGACATTGC GGTTCTTGCC CACATGATGC GCGACATGCA GAACCTGGAC
GCGATCTTTC TCGTGGTTGG AATGGGGGAG AGGGTCTACC TGGTGGCGCG CAGCCGCATT
GCCGAAGTCG ATGCCGGCGC TGTCATGCGC GTCTTCGGCG GGGGAGGGCA TGCCACTGCT
GCGGCTGCCA CGGTAAGGGA CCAGACCGTA ATCCAGGTTT TGGGTCGTCT CAACAGACTT
CTGCCCGAGC TGGTAAACCC TGTCAGGACA GCCGCTGACC TCATGTCATC GCCGGTGATT
ACCCTGCCCC TTGCCACGAC CATCACCGAG GCGCGGGAGA TACTCACCCG TTACAATGTG
AATGCCATGC CGGTCATGGA CGGGGAACGG ATGGCGGGGA TCATCTCACG CCGGATCGTG
GAAAAGGCGC TCTATCACGG TCTCGGCAAC CTGCCCGTGG ACGAATACAT GCACACGGAG
TTTCTGCGGG CCGCTCCCGA CACCCCGATC AACGCTATCC AGGACTATAT CGTCGGCCAG
CATCGGCGGC TGGTACCGGT ATTCAGCGGT GAACGGCTCG TGGGGGTCAT AACGCGGACT
GATCTCCTGC GGTATATGTA CACCGGCACG CAGCGCAACG CCGAACCGGT CTATGACCTG
GGAAGCGAGA ACCTGCCGGT GCGGCGGCGC GAGGTGGTCC ATCTCATGAA CAGGCACCTG
CCGCGCCCGA CGGTCGCCAT GCTGCGCGAC CTTGGCAAGG TGGGGGATGA ACTGGAGCTG
CCCGTGTACG CAGTCGGTGG TTTTGTGCGG GATCTGCTTC TGGGGGCAGA GAACGACGAC
ATCGACGTGT CGGTGGAAGG CGATGGCATC CTGTTCGCCG AGACCGTTGC GAATCGCGTG
GGATGCCGGG TGAAAAGTCA CGCCAAATTC GGCACCGCGG TTATTGTCTT TCCTGACGGA
CTCAAGGTGG ACGTCGCGAG CACACGGCTC GAATACTACG AAACGCCGGG CGCCCTGCCC
ACGGTGGAGC GTTCGTCGCT CAAGATGGAC CTGTACCGGC GTGACTTCAC CATCAACACC
CTGGCGGTGA AGCTCAACGC GGAAGGGTTC GGTACCCTGA TCGACTACTT CGGCGCCTAT
CGCGACCTGC AGGAAAAGAC CATCCGGGTG CTCCACAACC TGTCCTTTGT CGAGGACCCG
ACCAGGGTGT TCCGGGCTAT CCGCTTCGAG CAGCGTCTCG GATTCCCGAT CTCGCGACAC
ACGGAAAATC TCATCAAGAA CGCGGTGAAA ATGGGATTTT TGGACAAGCT GGGGGGGCGG
AGGCTGCTGA ACGAACTGGT GCTGATCCTT CGGGAGCGGG AGCCGGTCAA GGCCATCCTC
CGGATGTCTG GGCTGGGGCT TCTCCGGTTC ATTCACCCGG ACCTGGTCCT GGCGCCCAAC
ACCCTGCAGG TGCTGGACGA GGTCAAGAAG GTGATCACCT GGTTCGATCT CCTCTACCTG
GGCGAGAAGG TCGAGACGTG GGTGGTGTAC TTCCTGGCGC TCACCTCGAG TCTGCCGGAC
GAGGGGTTCT GGGGAACCTG CACGCGGCTT TCCGTATCTG AGCACTACCG GGAAAAACTC
ATCGATATGA GAGTTCACGG CGAGCAGGTC CTGGAGGTCA TGACCCGCAA GGCGGCCCGT
CGGGAGGATG TGCGCCGCAG CGATATCTAC TTCTGGCTCA GGGGGCTCTC TCCCGAAGTG
CTGCTCTACA TCATGGCGAA AACCCGGAGT GATGAGGTGA GACGTTACGT TTCCCTGTAC
GTGACCCAGT TGCGGGGCAT CGTTACCCAT ATTACCGGCG ATGACCTCAA GACCTTGGGA
ATCCCTTCAG GGCCGCGATA CCGGGAGATC CTCGACCGGG TCCTTACCGC CCGCCTCAAC
GGCGAAGCGG CAACCCGCGA CGACGAGATG CGCATTGCCG TGCGTCTGGC GGATTCGGCC
TGA
|
|---|
| Protein sequence | MDVITTHVNA DFDCLGAMVA ASKLYPDALM VFSGSQEKSM RDLFLKTTGY ALPFTRLRDV
DFSDITRLVL VDCQHTSRIG RFAEVARRPG VEVHIYDHHP GSSGDIRPSG GEIRDCGSST
TILTRKLMEQ GIEVTAVEAT LMMLGIYEDT GNLTFPSTTP EDYAAASWLL ERGANLNIVS
DFVSQELTAE QVALLNDLLK SLRSTPVNGV DIAVAHATLD HYVGDIAVLA HMMRDMQNLD
AIFLVVGMGE RVYLVARSRI AEVDAGAVMR VFGGGGHATA AAATVRDQTV IQVLGRLNRL
LPELVNPVRT AADLMSSPVI TLPLATTITE AREILTRYNV NAMPVMDGER MAGIISRRIV
EKALYHGLGN LPVDEYMHTE FLRAAPDTPI NAIQDYIVGQ HRRLVPVFSG ERLVGVITRT
DLLRYMYTGT QRNAEPVYDL GSENLPVRRR EVVHLMNRHL PRPTVAMLRD LGKVGDELEL
PVYAVGGFVR DLLLGAENDD IDVSVEGDGI LFAETVANRV GCRVKSHAKF GTAVIVFPDG
LKVDVASTRL EYYETPGALP TVERSSLKMD LYRRDFTINT LAVKLNAEGF GTLIDYFGAY
RDLQEKTIRV LHNLSFVEDP TRVFRAIRFE QRLGFPISRH TENLIKNAVK MGFLDKLGGR
RLLNELVLIL REREPVKAIL RMSGLGLLRF IHPDLVLAPN TLQVLDEVKK VITWFDLLYL
GEKVETWVVY FLALTSSLPD EGFWGTCTRL SVSEHYREKL IDMRVHGEQV LEVMTRKAAR
REDVRRSDIY FWLRGLSPEV LLYIMAKTRS DEVRRYVSLY VTQLRGIVTH ITGDDLKTLG
IPSGPRYREI LDRVLTARLN GEAATRDDEM RIAVRLADSA
|
|---|
| |