Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU1194 |
Symbol | |
ID | 2686746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | + |
Start bp | 1298743 |
End bp | 1299363 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637125868 |
Product | amino acid transporter LysE |
Protein accession | NP_952247 |
Protein GI | 39996296 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00235397 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAAATC TCAGTGTGTT CCTTGTTTCC GTTGTCCTCG TCACCGTTGC GCCGGGGCCC GATATCATCC AGGTTCTCAC CCGGGGAGTA AGCCAGGGGC GGATGGCCGG CTTGGCTGCC GCGGCCGGTT TCAGCACCGG CTGTATCTTC CACACGACCC TGGCGGCAGT GGGGGTGTCG GCCCTCATTC GGTCCTCCGA CGTGGCATTC ACCCTGATCA AGCTTGCCGG GGCCTGTTAT CTGGTCTACA TCGGCATCGG GGCGCTGCGG AACCGGGGGG CATCCCTGGT GGGCGAGCCG GCCGGCTTCG ACGCCTTGGG GGTCATCTAC CGCCAGAGCA TCGTGGCAAA CATCCTCAAT CCCAAGGTAA CCCTCTTTTT TCTCGCGTTC CTGCCCCAGT TCGTGTCCCC CGCGTCGGCC ACTCCAGGCT TTCAGCTCAT GGGGCTCGGC ATCATCTTCA TGGTCGTCAC CATCATCATC TTTGGCTCCG TGGCCCTTTT TGCGGGGCTC ATCGGGGACT GGCTCCGACG TCGGCCTGCC GTTGCCGGAC GGCTCCAGGC CCTGGCCGGC GTTACCTTCA TCGGCCTCGG CATCCGCGTG GCATTGCCCG ATGTCCGCTG A
|
Protein sequence | MTNLSVFLVS VVLVTVAPGP DIIQVLTRGV SQGRMAGLAA AAGFSTGCIF HTTLAAVGVS ALIRSSDVAF TLIKLAGACY LVYIGIGALR NRGASLVGEP AGFDALGVIY RQSIVANILN PKVTLFFLAF LPQFVSPASA TPGFQLMGLG IIFMVVTIII FGSVALFAGL IGDWLRRRPA VAGRLQALAG VTFIGLGIRV ALPDVR
|
| |