Gene GSU0686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGSU0686 
Symboldxs-1 
ID2685342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sulfurreducens PCA 
KingdomBacteria 
Replicon accessionNC_002939 
Strand
Start bp722405 
End bp724318 
Gene Length1914 bp 
Protein Length637 aa 
Translation table11 
GC content66% 
IMG OID637125358 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionNP_951743 
Protein GI39995792 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.351489 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCACGC TGCTCGACAC AATCACCTGC CCCGCCGATC TGAAAAAGAT CCCGCGGGAC 
CAACTCCCGG CTCTGGCCGA GGAGATCCGC GCGTTTCTTC TGGAAACCGT ATCCCGCACC
GGTGGCCATC TGGCCTCGAA CCTGGGGGTG GTCGAACTCT CCATTGCCCT CCACTACTGT
TTCGACTCGC CAACGGACCG GTTCGTCTGG GACGTGGGAC ACCAGGCCTA CACCCACAAG
ATTCTCACCG GCCGCCGCGA CCGCTTCCAC ACCCAGCGCC AGTACGGCGG CATCAGCGGC
TTCCCCAAGC GGAGCGAATC GTCCCACGAT GCTTTTGACA CCGGGCACTC CTCCACTTCC
ATCTCGGCTG GGCTCGGCAT GGCCATGGCC CGGGAGTTGA GGGGGGGGAG CAACAAGGTG
GTCGCCGTCA TCGGCGACGG CTCCATGACC GGCGGCATCG CCTTCGAGGC CCTCAACCAG
GCGGGGCACC TGAAGAAAAA CCTCATCGTC GTGCTCAACG ACAACGAGAT GTCCATCTCC
CCCAACGTGG GGGCCTTTTC CTCCTTTGTC TCCCGCAAGC TCACGGGCAG CTACTTCCGC
GAGTTGAAGA AGGAGGTCCA GGGGCTGCTG CAGAACATCC CGGCCATCGG CAAGGACATC
CTCCAGTTCG CCCGCCGGGC CGAGAACTCC CTCAAGGGGT TCCTGACCCC GGGGATGCTC
TTCGAGGCCC TGGGCTTCGA CTACATCGGC CCCATCCAGG GGCACAACCT GCCCCAGCTT
CTGGAGGTGT TCGAGAATGC CCGGGGATTG GATGGCCCGG TGGTGGTCCA CGTCATGACC
ACCAAGGGCA AGGGGTACGT GCCGGCAGAG ACGAACCCGT CCGCATTCCA CGGCGTCGGC
CCCTTTGACG TGGCCACCGG CAAAACCACC GGCAGCAAGC CGGGGGCCGC CTCCTATACC
GGCATCTTCG GAGATACCCT GGCACAACTG GCCCGGGAAA ACGAAAAAAT CGTCGCCATC
ACCGCGGCCA TGCCCGACGG CACCGGTCTT ACCGGCTTCG CGAAAGAGTT CCCCGAGCGC
TTCTTCGACG TGGGGATCGC GGAGCAGCAC GCCGTCACCT TTGCGGCGGG GCTGGCGGCC
GAAGGCTTCC GTCCCGTGAC CGCCATCTAC TCCACCTTCC TCCAACGGGC TTACGACCAG
GTGTTCCACG ACGTCTGCCT CCAGAACCTG CCGGTCGTCT TCGCCCTGGA CCGGGGGGGA
GTCGTGGGCG ACGACGGCCC CACCCACCAC GGGGTCTTCG ACCTGTCGTA CCTGCGGCAC
CTGCCCGGCA TGACCCTGAT GGCGCCCAAA GACGAGAACG AACTGCGCCA CATGCTCAAG
ACCGCCGTCT CCCATGATGG CCCCATCGCC CTGCGCTATC CCCGCGGTGC CGGCTGCGGC
ATCCCCCTGG ACCAGGAGCT TCGGGAGATC CCCATCGGCA CAGGTGAAAT CCTGGCCGAA
GGAGACGACG TCGCCATCAT CGCCATCGGC ATCACGGTCC TGCCCGCCCT TGAGGCTGCA
CGGACCCTGG CGGAGAAAGG AATCCGGGCC ACGGTGATCA ACGCCCGCTT CGTCAAGCCC
CTGGACCGGG AGATGATCCT CCAGGCGGCC CGCCGGACCG GCTGCATAAT CACCGCCGAG
GAAAACGCCC TGCAGGGAGG CTTCGGCAGC GCCGTACTCG AACTCCTCGC CGACGAGGGG
ATGACCGGCG TGCGGGTGAA GCGGCTCGGC ATCCCCGACC GGTTCGTGGA GCAGGGTCCC
CAGCCGCAAC TGCGGGCCGA CCTGGGCATC GACGCCGCCG GCATCGCTGC CGCGACCGAG
GCGTTCCTGG CGGCAAAGGG GGCCCCGGCG CCCGCTCTCT CGATGGTCAA ATGA
 
Protein sequence
MSTLLDTITC PADLKKIPRD QLPALAEEIR AFLLETVSRT GGHLASNLGV VELSIALHYC 
FDSPTDRFVW DVGHQAYTHK ILTGRRDRFH TQRQYGGISG FPKRSESSHD AFDTGHSSTS
ISAGLGMAMA RELRGGSNKV VAVIGDGSMT GGIAFEALNQ AGHLKKNLIV VLNDNEMSIS
PNVGAFSSFV SRKLTGSYFR ELKKEVQGLL QNIPAIGKDI LQFARRAENS LKGFLTPGML
FEALGFDYIG PIQGHNLPQL LEVFENARGL DGPVVVHVMT TKGKGYVPAE TNPSAFHGVG
PFDVATGKTT GSKPGAASYT GIFGDTLAQL ARENEKIVAI TAAMPDGTGL TGFAKEFPER
FFDVGIAEQH AVTFAAGLAA EGFRPVTAIY STFLQRAYDQ VFHDVCLQNL PVVFALDRGG
VVGDDGPTHH GVFDLSYLRH LPGMTLMAPK DENELRHMLK TAVSHDGPIA LRYPRGAGCG
IPLDQELREI PIGTGEILAE GDDVAIIAIG ITVLPALEAA RTLAEKGIRA TVINARFVKP
LDREMILQAA RRTGCIITAE ENALQGGFGS AVLELLADEG MTGVRVKRLG IPDRFVEQGP
QPQLRADLGI DAAGIAAATE AFLAAKGAPA PALSMVK