Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU0686 |
Symbol | dxs-1 |
ID | 2685342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 722405 |
End bp | 724318 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637125358 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | NP_951743 |
Protein GI | 39995792 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.351489 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCACGC TGCTCGACAC AATCACCTGC CCCGCCGATC TGAAAAAGAT CCCGCGGGAC CAACTCCCGG CTCTGGCCGA GGAGATCCGC GCGTTTCTTC TGGAAACCGT ATCCCGCACC GGTGGCCATC TGGCCTCGAA CCTGGGGGTG GTCGAACTCT CCATTGCCCT CCACTACTGT TTCGACTCGC CAACGGACCG GTTCGTCTGG GACGTGGGAC ACCAGGCCTA CACCCACAAG ATTCTCACCG GCCGCCGCGA CCGCTTCCAC ACCCAGCGCC AGTACGGCGG CATCAGCGGC TTCCCCAAGC GGAGCGAATC GTCCCACGAT GCTTTTGACA CCGGGCACTC CTCCACTTCC ATCTCGGCTG GGCTCGGCAT GGCCATGGCC CGGGAGTTGA GGGGGGGGAG CAACAAGGTG GTCGCCGTCA TCGGCGACGG CTCCATGACC GGCGGCATCG CCTTCGAGGC CCTCAACCAG GCGGGGCACC TGAAGAAAAA CCTCATCGTC GTGCTCAACG ACAACGAGAT GTCCATCTCC CCCAACGTGG GGGCCTTTTC CTCCTTTGTC TCCCGCAAGC TCACGGGCAG CTACTTCCGC GAGTTGAAGA AGGAGGTCCA GGGGCTGCTG CAGAACATCC CGGCCATCGG CAAGGACATC CTCCAGTTCG CCCGCCGGGC CGAGAACTCC CTCAAGGGGT TCCTGACCCC GGGGATGCTC TTCGAGGCCC TGGGCTTCGA CTACATCGGC CCCATCCAGG GGCACAACCT GCCCCAGCTT CTGGAGGTGT TCGAGAATGC CCGGGGATTG GATGGCCCGG TGGTGGTCCA CGTCATGACC ACCAAGGGCA AGGGGTACGT GCCGGCAGAG ACGAACCCGT CCGCATTCCA CGGCGTCGGC CCCTTTGACG TGGCCACCGG CAAAACCACC GGCAGCAAGC CGGGGGCCGC CTCCTATACC GGCATCTTCG GAGATACCCT GGCACAACTG GCCCGGGAAA ACGAAAAAAT CGTCGCCATC ACCGCGGCCA TGCCCGACGG CACCGGTCTT ACCGGCTTCG CGAAAGAGTT CCCCGAGCGC TTCTTCGACG TGGGGATCGC GGAGCAGCAC GCCGTCACCT TTGCGGCGGG GCTGGCGGCC GAAGGCTTCC GTCCCGTGAC CGCCATCTAC TCCACCTTCC TCCAACGGGC TTACGACCAG GTGTTCCACG ACGTCTGCCT CCAGAACCTG CCGGTCGTCT TCGCCCTGGA CCGGGGGGGA GTCGTGGGCG ACGACGGCCC CACCCACCAC GGGGTCTTCG ACCTGTCGTA CCTGCGGCAC CTGCCCGGCA TGACCCTGAT GGCGCCCAAA GACGAGAACG AACTGCGCCA CATGCTCAAG ACCGCCGTCT CCCATGATGG CCCCATCGCC CTGCGCTATC CCCGCGGTGC CGGCTGCGGC ATCCCCCTGG ACCAGGAGCT TCGGGAGATC CCCATCGGCA CAGGTGAAAT CCTGGCCGAA GGAGACGACG TCGCCATCAT CGCCATCGGC ATCACGGTCC TGCCCGCCCT TGAGGCTGCA CGGACCCTGG CGGAGAAAGG AATCCGGGCC ACGGTGATCA ACGCCCGCTT CGTCAAGCCC CTGGACCGGG AGATGATCCT CCAGGCGGCC CGCCGGACCG GCTGCATAAT CACCGCCGAG GAAAACGCCC TGCAGGGAGG CTTCGGCAGC GCCGTACTCG AACTCCTCGC CGACGAGGGG ATGACCGGCG TGCGGGTGAA GCGGCTCGGC ATCCCCGACC GGTTCGTGGA GCAGGGTCCC CAGCCGCAAC TGCGGGCCGA CCTGGGCATC GACGCCGCCG GCATCGCTGC CGCGACCGAG GCGTTCCTGG CGGCAAAGGG GGCCCCGGCG CCCGCTCTCT CGATGGTCAA ATGA
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Protein sequence | MSTLLDTITC PADLKKIPRD QLPALAEEIR AFLLETVSRT GGHLASNLGV VELSIALHYC FDSPTDRFVW DVGHQAYTHK ILTGRRDRFH TQRQYGGISG FPKRSESSHD AFDTGHSSTS ISAGLGMAMA RELRGGSNKV VAVIGDGSMT GGIAFEALNQ AGHLKKNLIV VLNDNEMSIS PNVGAFSSFV SRKLTGSYFR ELKKEVQGLL QNIPAIGKDI LQFARRAENS LKGFLTPGML FEALGFDYIG PIQGHNLPQL LEVFENARGL DGPVVVHVMT TKGKGYVPAE TNPSAFHGVG PFDVATGKTT GSKPGAASYT GIFGDTLAQL ARENEKIVAI TAAMPDGTGL TGFAKEFPER FFDVGIAEQH AVTFAAGLAA EGFRPVTAIY STFLQRAYDQ VFHDVCLQNL PVVFALDRGG VVGDDGPTHH GVFDLSYLRH LPGMTLMAPK DENELRHMLK TAVSHDGPIA LRYPRGAGCG IPLDQELREI PIGTGEILAE GDDVAIIAIG ITVLPALEAA RTLAEKGIRA TVINARFVKP LDREMILQAA RRTGCIITAE ENALQGGFGS AVLELLADEG MTGVRVKRLG IPDRFVEQGP QPQLRADLGI DAAGIAAATE AFLAAKGAPA PALSMVK
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