| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0655 |
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| Symbol | rpoH |
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| ID | 2685542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | - |
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| Start bp | 690757 |
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| End bp | 691611 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637125326 |
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| Product | RNA polymerase sigma-32 factor |
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| Protein accession | NP_951712 |
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| Protein GI | 39995761 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00800994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGATGA GCTTACCTGT TGTAGCGGAT AGCCTTACCG TCTACCTGAG AGAAATCAGA
AAATTTCCCG TCCTCACTCC TGAGGAGGAA TACCGGTTTG CTGTTAAATT TTACGAGGAC
AAGGACCTGG AAGCGGCCCA CTCTCTCATC ACTTCGAATC TTAGATTCGT TGTCAAGATC
GCAGCCGAGT ATCGTTCCTA TGGACTGAAA ATGCTCGATC TCATTCAGGA AGGCAACGTC
GGTCTGATGA TGGCAGTACG TAAATTTAAT CCCTACAAAG GGATACGTCT TATCTCCTAT
GCGGTCTGGT GGATCCGCGC ATATATACAA AACCATATCA TATCGGCATG GAGCCTCCTG
AAGATAGGCA CCACCCAGGC GCAGAAGAAG CTGTTCTTCA AGCTGAATCA AGCAAAAAAC
GCGATCAAAG GGCTCACGGG CACCGACGAC ATCGAAGCAA CAGCGACCTC GCTCCACGTG
AAAGAGTCCG AGGTCCTCGA AATGGACCAG CGGATGCGCG GTGACTTCTA CCTCGACGCA
GAAATCAAGA ATGGCGACGG ACTCACCATC CTGGAAACAC TGGCTGACGA GCGGCAAAAC
CAAGAGGACA CTCTGGCAGA ACTCCAAGAG TCCGAGTTGC TCAAGCAGCA TATCGCCGGT
GCTCTCGGCA AACTTAACGA GAAGGAGCGT TTTATCGTCG AGCAGCGCGT GACAGCCGAT
ACTCCGCTCA CCCTTCAGGA GATCGCCGAT CGATTCTCGA TCTCCCGCGA ACGTGTGCGC
CAAATTGAAG AGGCTGCTCT CCGTAAAATT AAATCATATC TTATCCCCAT TATTGCAGAG
ACGCGACCGG TCTGA
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| Protein sequence | MSMSLPVVAD SLTVYLREIR KFPVLTPEEE YRFAVKFYED KDLEAAHSLI TSNLRFVVKI
AAEYRSYGLK MLDLIQEGNV GLMMAVRKFN PYKGIRLISY AVWWIRAYIQ NHIISAWSLL
KIGTTQAQKK LFFKLNQAKN AIKGLTGTDD IEATATSLHV KESEVLEMDQ RMRGDFYLDA
EIKNGDGLTI LETLADERQN QEDTLAELQE SELLKQHIAG ALGKLNEKER FIVEQRVTAD
TPLTLQEIAD RFSISRERVR QIEEAALRKI KSYLIPIIAE TRPV
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