Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU0329 |
Symbol | |
ID | 2686787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 358454 |
End bp | 360352 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637124995 |
Product | general secretion pathway protein D, putative |
Protein accession | NP_951389 |
Protein GI | 39995438 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.989309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGAAAC GCTTCCTGAA TCTGCTGACC GCTGCCGTCC TGGCCTGCGC CCTTCTTGCA CCGCTGCCGG CGAGTGCCAA GGGGGTGGTT CTCAACTTCA ACGACGTGGA CATCGCCACC ATGGTGAAGT TCATCAGCGA CCTGACCGGC AAGAATTTCG TCCTGGACGA GCGGGTGAAG GGAAAGATTT CCATCTACTC CCCCTCCAAG CTGACGCCGG ATGAGGCGTT CAGCCTGTTC ACATCGGTTC TGGAGCTGAA AGGGTTCACC CTTGTACAGG CCGGCAAGGT CTACAAGGTG GTTCCTACGG CGGCAGCCAA GCAATCAGGA ATGAGGCTTT TGAGCGACAA GGACCGCCTC CCCGTGAGCG ATGCCTATGT GGCCCGGATA ATCCCCCTGG AGCGCATCTC CGCCCAGGAA GCGGTGGCCT TTCTCCAGCC CATTGTCTCC AAGGACGGCT ACATCGCGGC ATTTGGCGCC AGCAACATGC TGATGGTGGT TGATTCTGCC CTGAACATCC AGAAACTCAC CGGCATTCTC ACCTTGGTGG ATTCTCCCCA GAAGCGGGAG GGCGCCGAGA TCATCTTCCT CAAAAATGCC TCGGCGGACA GCGTTTCCGG CGTGATCCGC GAATGGCTCG GCGGCAAGAC AAGCCGGCCG GCCGGCCAGG CGGGACAGGC TACCGCAACA TCAAGCGCAG GGGTCCTCAT CGTCCCCGAC ACCCGGCTCA ATGCGCTGGT CATTTTCGGC AGCGATCAGG ACAAGGACGA CATCAAGAAA CTGATTGCCA TGGTGGACGT GGTCCCGCCG ACCACCAGCA GCAAGATCAA CGTCTACTAT CTGGAGAACG CCGATGCCAC CGACGTGGCA AAGGTGATCG ACGGCCTCAT CAAGGGCACG CCCACCACCC CCGGGCAGCC CGGGGTGCCC GCAGCGGCGC CCGTTCAATC CCCCTTCGAG GGTGGAAAGA TCTCGGTCAC GCCGGACAAG GCTACCAACT CCCTGGTGAT CATGGCCTCG CCGGTCGATT ACCAGAACAT CCTCCAGGTG ATCCAGAAGC TCGATAAACG GCGGCGCCAG GTGTTCGTCC AGGCCCTCAT CGCCGAAGTC TCCCTCGACA AGCTCAAGGA TGTGGGTGTT CAGATCGGCG CGCTGGCCGT GGGCACGCAG GGCGACGCGT CCGGCGGCGC CGTCCTGGAC CCGTTCAATT TCCTCAGCGC CACCAGCGGC CCGCAATTTC TCCTGGTAAA AGCACTTGAA GAACTTGGGA AAAACGTCAG TGTGTCGGCC CAGGTCAAGG CCCTCGTCTC CGACGGCGCC ATTAATGTAC TCTCCACCCC GAACATCCTG ACCTCGGACA ACAAGGAAGC GGAAATCTTC GTGGGTGAGA ACGTTCCATT CCTCTCCCAG ACCAATCTGA CGACCGGCGG AATTTCTCAG CAATCCATCG AGCGCAAGGA TACCGGCATC ACGCTCAGGA TCACTCCCCA GATCAGCGAA GGGGAGTACG TGAAGCTCGA CATCTACCAG GAAATTTCTG CAGTAAAGGA AAACAAGGGA CAGGCGAATG ACCTCGTCAC CACCAAGCGC TCGGCCAAGA CCGCTGTCGT GGTCAAGGAC AAGGACACGG TGGTGATCGG CGGGTTGATC CAGGACCGGG ACACCGAAAC CATCAACAAG ATCCCGCTGC TGGGCGACAT CCCGCTTCTG GGCTGGCTGT TCAAGACCAA ATCGACGCGC AGGGAGAAGA CCAACCTGAT GATCGTCCTT ACGCCGCGCA TCATTCGGGG AGCCGAGGAG ATGAACGATG TCTCCGGCCA GCAGCGCGAC AAGTTCGGCG AAGCGCTCAG TCTCGACGCT CCCTTTGACC TCAAGCGCGA CCTCCAACTG AGCAAATGA
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Protein sequence | MKKRFLNLLT AAVLACALLA PLPASAKGVV LNFNDVDIAT MVKFISDLTG KNFVLDERVK GKISIYSPSK LTPDEAFSLF TSVLELKGFT LVQAGKVYKV VPTAAAKQSG MRLLSDKDRL PVSDAYVARI IPLERISAQE AVAFLQPIVS KDGYIAAFGA SNMLMVVDSA LNIQKLTGIL TLVDSPQKRE GAEIIFLKNA SADSVSGVIR EWLGGKTSRP AGQAGQATAT SSAGVLIVPD TRLNALVIFG SDQDKDDIKK LIAMVDVVPP TTSSKINVYY LENADATDVA KVIDGLIKGT PTTPGQPGVP AAAPVQSPFE GGKISVTPDK ATNSLVIMAS PVDYQNILQV IQKLDKRRRQ VFVQALIAEV SLDKLKDVGV QIGALAVGTQ GDASGGAVLD PFNFLSATSG PQFLLVKALE ELGKNVSVSA QVKALVSDGA INVLSTPNIL TSDNKEAEIF VGENVPFLSQ TNLTTGGISQ QSIERKDTGI TLRITPQISE GEYVKLDIYQ EISAVKENKG QANDLVTTKR SAKTAVVVKD KDTVVIGGLI QDRDTETINK IPLLGDIPLL GWLFKTKSTR REKTNLMIVL TPRIIRGAEE MNDVSGQQRD KFGEALSLDA PFDLKRDLQL SK
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