Gene GSU0329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGSU0329 
Symbol 
ID2686787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sulfurreducens PCA 
KingdomBacteria 
Replicon accessionNC_002939 
Strand
Start bp358454 
End bp360352 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content60% 
IMG OID637124995 
Productgeneral secretion pathway protein D, putative 
Protein accessionNP_951389 
Protein GI39995438 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02517] general secretion pathway protein D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.989309 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGAAAC GCTTCCTGAA TCTGCTGACC GCTGCCGTCC TGGCCTGCGC CCTTCTTGCA 
CCGCTGCCGG CGAGTGCCAA GGGGGTGGTT CTCAACTTCA ACGACGTGGA CATCGCCACC
ATGGTGAAGT TCATCAGCGA CCTGACCGGC AAGAATTTCG TCCTGGACGA GCGGGTGAAG
GGAAAGATTT CCATCTACTC CCCCTCCAAG CTGACGCCGG ATGAGGCGTT CAGCCTGTTC
ACATCGGTTC TGGAGCTGAA AGGGTTCACC CTTGTACAGG CCGGCAAGGT CTACAAGGTG
GTTCCTACGG CGGCAGCCAA GCAATCAGGA ATGAGGCTTT TGAGCGACAA GGACCGCCTC
CCCGTGAGCG ATGCCTATGT GGCCCGGATA ATCCCCCTGG AGCGCATCTC CGCCCAGGAA
GCGGTGGCCT TTCTCCAGCC CATTGTCTCC AAGGACGGCT ACATCGCGGC ATTTGGCGCC
AGCAACATGC TGATGGTGGT TGATTCTGCC CTGAACATCC AGAAACTCAC CGGCATTCTC
ACCTTGGTGG ATTCTCCCCA GAAGCGGGAG GGCGCCGAGA TCATCTTCCT CAAAAATGCC
TCGGCGGACA GCGTTTCCGG CGTGATCCGC GAATGGCTCG GCGGCAAGAC AAGCCGGCCG
GCCGGCCAGG CGGGACAGGC TACCGCAACA TCAAGCGCAG GGGTCCTCAT CGTCCCCGAC
ACCCGGCTCA ATGCGCTGGT CATTTTCGGC AGCGATCAGG ACAAGGACGA CATCAAGAAA
CTGATTGCCA TGGTGGACGT GGTCCCGCCG ACCACCAGCA GCAAGATCAA CGTCTACTAT
CTGGAGAACG CCGATGCCAC CGACGTGGCA AAGGTGATCG ACGGCCTCAT CAAGGGCACG
CCCACCACCC CCGGGCAGCC CGGGGTGCCC GCAGCGGCGC CCGTTCAATC CCCCTTCGAG
GGTGGAAAGA TCTCGGTCAC GCCGGACAAG GCTACCAACT CCCTGGTGAT CATGGCCTCG
CCGGTCGATT ACCAGAACAT CCTCCAGGTG ATCCAGAAGC TCGATAAACG GCGGCGCCAG
GTGTTCGTCC AGGCCCTCAT CGCCGAAGTC TCCCTCGACA AGCTCAAGGA TGTGGGTGTT
CAGATCGGCG CGCTGGCCGT GGGCACGCAG GGCGACGCGT CCGGCGGCGC CGTCCTGGAC
CCGTTCAATT TCCTCAGCGC CACCAGCGGC CCGCAATTTC TCCTGGTAAA AGCACTTGAA
GAACTTGGGA AAAACGTCAG TGTGTCGGCC CAGGTCAAGG CCCTCGTCTC CGACGGCGCC
ATTAATGTAC TCTCCACCCC GAACATCCTG ACCTCGGACA ACAAGGAAGC GGAAATCTTC
GTGGGTGAGA ACGTTCCATT CCTCTCCCAG ACCAATCTGA CGACCGGCGG AATTTCTCAG
CAATCCATCG AGCGCAAGGA TACCGGCATC ACGCTCAGGA TCACTCCCCA GATCAGCGAA
GGGGAGTACG TGAAGCTCGA CATCTACCAG GAAATTTCTG CAGTAAAGGA AAACAAGGGA
CAGGCGAATG ACCTCGTCAC CACCAAGCGC TCGGCCAAGA CCGCTGTCGT GGTCAAGGAC
AAGGACACGG TGGTGATCGG CGGGTTGATC CAGGACCGGG ACACCGAAAC CATCAACAAG
ATCCCGCTGC TGGGCGACAT CCCGCTTCTG GGCTGGCTGT TCAAGACCAA ATCGACGCGC
AGGGAGAAGA CCAACCTGAT GATCGTCCTT ACGCCGCGCA TCATTCGGGG AGCCGAGGAG
ATGAACGATG TCTCCGGCCA GCAGCGCGAC AAGTTCGGCG AAGCGCTCAG TCTCGACGCT
CCCTTTGACC TCAAGCGCGA CCTCCAACTG AGCAAATGA
 
Protein sequence
MKKRFLNLLT AAVLACALLA PLPASAKGVV LNFNDVDIAT MVKFISDLTG KNFVLDERVK 
GKISIYSPSK LTPDEAFSLF TSVLELKGFT LVQAGKVYKV VPTAAAKQSG MRLLSDKDRL
PVSDAYVARI IPLERISAQE AVAFLQPIVS KDGYIAAFGA SNMLMVVDSA LNIQKLTGIL
TLVDSPQKRE GAEIIFLKNA SADSVSGVIR EWLGGKTSRP AGQAGQATAT SSAGVLIVPD
TRLNALVIFG SDQDKDDIKK LIAMVDVVPP TTSSKINVYY LENADATDVA KVIDGLIKGT
PTTPGQPGVP AAAPVQSPFE GGKISVTPDK ATNSLVIMAS PVDYQNILQV IQKLDKRRRQ
VFVQALIAEV SLDKLKDVGV QIGALAVGTQ GDASGGAVLD PFNFLSATSG PQFLLVKALE
ELGKNVSVSA QVKALVSDGA INVLSTPNIL TSDNKEAEIF VGENVPFLSQ TNLTTGGISQ
QSIERKDTGI TLRITPQISE GEYVKLDIYQ EISAVKENKG QANDLVTTKR SAKTAVVVKD
KDTVVIGGLI QDRDTETINK IPLLGDIPLL GWLFKTKSTR REKTNLMIVL TPRIIRGAEE
MNDVSGQQRD KFGEALSLDA PFDLKRDLQL SK