Gene GSU0129 details

Gene Information

• Locus tag: GSU0129
• Symbol: def-1
• ID: 2687913
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: +
• Start bp: 144291
• End bp: 144839
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637124796
• Product: polypeptide deformylase
• Protein accession: NP_951191
• Protein GI: 39995240
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCTATTA TCAAAAAGAT TAACCCATTA CGGAAGGTTC AGACCATGGT ACGCACGATC 
CTCACCTATC CCGATCCGGT GCTGAAGAAA AAAGCGGTGC CGGTTACCAT CATCAACGAC 
GCCACCCGTG AACTGGTTCG CGACATGGCC GAAACCATGT ACGATGCCCA GGGCGTCGGG 
CTGGCGGCCC CCCAGATCGG CGTGAGCCAG CGGGTCATCG TCATTGATGT TTCACAGCGC 
GACGAGCGGC CCGAGCTGAT CGTCTGCATC AACCCGGTCA TCATTCATGG CGAGGGAGAG 
TCCTACGAGG AGGAGGGGTG CCTTTCGGTC CCCAAGTACT CGGCCAATGT CCACCGCCAC 
GAGCGGGTGG TGGTCAAGTC CCTCAACCTG GAGGGAGAGG AGGTCGTCCA TCGGGCGGAG 
GGACTGCTTG CCATCGCCTT TCAGCATGAG ATCGACCACC TGGACGGCGT CCTTTTTGTG 
GATCACCTCT CCGCGCTCAA GAAGGAAATG TTCAAGAAAA AATACCGCCG CATGACCGAA 
GAGGAGTGA 

 

Protein sequence

MAIIKKINPL RKVQTMVRTI LTYPDPVLKK KAVPVTIIND ATRELVRDMA ETMYDAQGVG 
LAAPQIGVSQ RVIVIDVSQR DERPELIVCI NPVIIHGEGE SYEEEGCLSV PKYSANVHRH 
ERVVVKSLNL EGEEVVHRAE GLLAIAFQHE IDHLDGVLFV DHLSALKKEM FKKKYRRMTE 
EE