| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0113 |
|---|
| Symbol | atpD |
|---|
| ID | 2688131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 127605 |
|---|
| End bp | 129017 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637124780 |
|---|
| Product | F0F1 ATP synthase subunit beta |
|---|
| Protein accession | NP_951175 |
|---|
| Protein GI | 39995224 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
|---|
| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.800377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGA ACTTCGGTAA AATTTCGCAG GTCATCGGCG CGGTTATTGA CGTCGAGTTT
GAGCCGGGCA AACTGCCTCC CATCTACAAC GCCCTCCGGG TGACCAACCC GGCCATTGAC
GATAAGGAAT ACAACTTGGT GCTCGAAGTG GCCCAGCACC TGGGTGAAAA CGCGGTCCGG
ACCATCGCCA TGGATTCCAC CGACGGTCTT GTCCGGGGCC AGGCAGTGCT CGATACCGGT
AAGCAGATTT CCGTGCCGGT GGGCCGCAAG ACCCTGGGTC GAATCCTCAA CGTCATCGGC
GAGCCGGTGG ACGAGATGGG TCCGGTCAAC GCCGAGAAAG AGTACGGAAT CCACCGCGAA
GCTCCCGCCT TCGTGGACCA GTCCACCAAG GTTGAAGCCT TCACCACCGG GATCAAGGTC
GTCGACCTTC TCGCTCCCTA CGCTCGGGGC GGCAAGATTG GCCTCTTCGG CGGCGCCGGC
GTCGGCAAGA CCGTTCTCAT CATGGAGCTC ATCAACAACA TCGCCAAGCA GCACGGTGGC
TTCTCCGTGT TTGCCGGCGT CGGTGAGCGG ACCCGCGAAG GAAACGATCT CTGGATGGAG
ATGAAGGAGT CCGGGGTTCT CGACAAGGCC GCCCTCGTCT ACGGCCAGAT GAACGAGCCG
CCGGGAGCAC GTGCCCGGGT TGCCCTCTCC GCCCTTTCCA TCGCCGAGTA CTTCCGTGAC
GAAGAAGGTC AGAACGTGCT TCTCTTCGTT GACAATATCT TCCGCTTCAC CCAGGCGGGT
TCCGAAGTTT CCGCGCTCCT CGGCCGGATT CCCTCCGCCG TTGGTTACCA GCCCACACTG
GCCACAGAGA TGGGAGAGCT TCAGGAGCGA ATCACCTCCA CCACCAAGGG CTCCATTACC
TCGGTTCAGG CGATCTACGT TCCGGCCGAC GACCTTACCG ACCCGGCTCC GGCAACCGCC
TTCGCCCACC TGGACGCAAC GACCGTTCTT TCCCGTCAGA TTGCCGAGCT CGGTATCTAC
CCGGCCGTTG ACCCGCTGGA CTCCACGTCG CGGATTCTCG ATCCCCAGGT AATCGGCGAG
GAGCACTACT CCATTGCCCG GCAGGTCCAG TACGTGCTCC AGAAGTACAA GGATCTCCAG
GACATCATCG CTATTCTCGG TATGGACGAA CTCTCCGAGG AGGACAAGCT GGTCGTTGCC
CGGGCCCGGA AGATCCAGCG TTTCCTCTCC CAGCCGTTCC ACGTTGCCGA AGCCTTCACC
GGCAGCCCCG GCAAGTACGT TGAGCTGAAG GACACCATCA AGGGCTTCCA GGAGATCGTC
GCCGGCAAGC ATGACGATGT CCCCGAGCAG GCCTTCTACA TGGTCGGAAC CATTGAAGAG
GCCCTCGAAA AGGCCAAGAA GCTCGCTGCC TAA
|
|---|
| Protein sequence | MSQNFGKISQ VIGAVIDVEF EPGKLPPIYN ALRVTNPAID DKEYNLVLEV AQHLGENAVR
TIAMDSTDGL VRGQAVLDTG KQISVPVGRK TLGRILNVIG EPVDEMGPVN AEKEYGIHRE
APAFVDQSTK VEAFTTGIKV VDLLAPYARG GKIGLFGGAG VGKTVLIMEL INNIAKQHGG
FSVFAGVGER TREGNDLWME MKESGVLDKA ALVYGQMNEP PGARARVALS ALSIAEYFRD
EEGQNVLLFV DNIFRFTQAG SEVSALLGRI PSAVGYQPTL ATEMGELQER ITSTTKGSIT
SVQAIYVPAD DLTDPAPATA FAHLDATTVL SRQIAELGIY PAVDPLDSTS RILDPQVIGE
EHYSIARQVQ YVLQKYKDLQ DIIAILGMDE LSEEDKLVVA RARKIQRFLS QPFHVAEAFT
GSPGKYVELK DTIKGFQEIV AGKHDDVPEQ AFYMVGTIEE ALEKAKKLAA
|
|---|
| |