| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0051 |
|---|
| Symbol | |
|---|
| ID | 2688418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 65570 |
|---|
| End bp | 68335 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637124716 |
|---|
| Product | CRISPR-associated HD domain-containing protein |
|---|
| Protein accession | NP_951113 |
|---|
| Protein GI | 39995162 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR02621] CRISPR-associated helicase Cas3, Anaes-subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAC GGGGGATAAC TATGTCGACA TCTGAAGATT TTGAATCAAA CTACAAACTC
CTAACAGGTA ATAGTCCTTT CCCATGGCAG CGGAAGCTAT TCACCATGTT TGTAGACAAA
CGGTTTCCAG AAACTTGCCC TGTCCCGACT GGCCTCGGGA AAACTTCAAT CATCGCAATC
TGGCTTCTGG CAGTGGCCCA CCATACCCGT AACGGCACAG TTACTGAATT TCCGCGGCGC
CTCGTCTATG TGGTGAACCG GAGAACCGTG GTGGACCAGG CTACGGATGA AGCCAGAAAA
ATGCTTGAAG CACTCATTAC CAAGCCAGAA CTCTGTGCTG TTGCTGATGT GCTGAGTTCG
CTCGCGACCC GGGCTGATGC AGCACCTTTG GCGATCAGCA CGCTACGAGG ACAGTTCGCT
GACAACGCGG AGTGGCGGGA CGACCCGGCC CGGTCTGCCG TGATCGTCGG CACGGTGGAT
ATGATTGGCA GTCGATTGCT CTTTTCCGGT TACGGGTGTG GGTTCAAGTC CCGTCCGTTG
CATGCTGGAT TTCTCGGACA GGACACCTTA CTGGTTCATG ACGAGGCCCA CCTGGAGCCC
GCATTTCAGG AGCTGGTATC GGCCATTGCA TCGGAACAGC AGCGCCGCCG CGACTTCTGG
CAGTTACGAG TCATGGAACT AACGGCAACT TCTCGTTCTG ACATTACTGA CGCGAATACT
CTCTTTACAG GGGAAGACCG GAAACATGAT GTGGCCCGGA AACGACTCGA AGCGAAAAAA
GGGATTTCTT TTCATCCGGT TGACGATGAA AAGAGGGTTA CTGAGAAGGT TGAACAACTG
ACCAAAGGGT ACAAAGACAG TGGGCAGGCA ATTCTCGTCT TTCTTCGCGG GGTCAAAGAG
GTGATGAAGG TAGCGGCATT TCTGCGCAAG GTGGTGCCGG ATGGTGTAGA GACCCTGACC
GGCACCCTGC GCGGCTTCGA GCGCGACACG TTGGCCAGGG AAAATGCCGT CTTTGCCCGC
TTCATGCCTC ACTCCGAAGC GATACCACAG CAGGGCACCG TCTATCTCGT GTGTACCTCC
GCCGGAGAAG TCGGGGTCAA CATATCAGCG GATCATCTTG TCTGCGACCT GACCCCCTTC
GAAAGCATGA TGCAACGCTT TGGACGGGTG AATCGATTTG GTGATGGCAA TGCACATATC
GACGTCGTTC ATCGCCCATT CGGAAAGGGC TCTGGTTTCG ACGAATCTGC GCCCGCCGCA
TTGGACGATG ATCCGTCAGC GGGGGCCGCC AGCCAGGACG ATCTAACTGC CGACGCGGCG
CCCAAGAAGA AAGAGAAACC GTTGTCACCT TTTGATCGGG CTTGCGCACA AACGCTGTCC
GTGTTGAAGC AACTGCCCTT GCGTGAAGAC CGGCGTCGCG ATGCGAGCCC TGCGGCACTA
AGCGAAATAC CCCTTGCCGA CCGGCAAGCT GCTTTCACGC CACCTCCCGT CATTCTTCCG
ATAAGTGACA TTCTTTTCGA TGTCTGGGCG CTGACCTCGG TTCGCCAGAA ACTGCCCGGC
CGACCGCCAG TTGCCGATTG GCTGCATGGC GTTACCGAAT GGGAGCCGCC TGCAACCCAT
GTTGCATGGC GGGATGAGGT CTATCTGGTC AGCGGCATGT TGGAGATCTG TCCGCCCGAA
GACCTGCTTG AAGACTATCC CCTCAAGCCT CACGAATTGT TGCGCGACCA GACCACACGG
GTGTTTTCCG AGCTTGAGAA AATCGCCAGC CGATGTCCGG CAAAGCCTGT ATGGCTTCTC
AACGCTGACG GCAAGGTTGA CGTGCTTCCC TTGGAGAAAT TAGTCGATAG GGACAAGCTG
AGACTGGCCG ACTGTACTGT GTTGCTGCCG CCAGCGGTTG GTGGCCTCGA CGGAGGCATG
CTCAACGGTG ATGCCGCTTA TGACCCCAAG GTGGTTTATG ACATAGCAGA TCAATGGTTG
GGCGAGAACG ACAGGCCGCG TCGTTGCCGC CTTTGGGACA ACGAGGGCCC TTTATCAGGA
ATGCGGCTTG TGCGAACTAT CGACGTGCGC CCCGATGCCG AAGAACAGGA GGAAGAAAGC
GCAGAATCAA CTATACGGCG GTGCTGGCAT TGGTATGTAC GGCCCCGCTC CGCTGACGAT
GATGGCTCAA GGACGGCACG AGTAAATCAG GAACTGACAT CCCACCTTCG GTCTGCCGAA
GACTTCGCCA AGAAGCTCGT CGACAGGCTC GGCTTGGGCG CGCTGGAAGC AAAGGCGGTA
GTCTTGGCAG CGCGCTGGCA TGACCTCGGC AAAGATCGCC TGATCTGGCA GCGCTCCATC
GGTAATCGTG ACTACCCTGG GCTTGTCCTG GCGAAGTCCG GGTCCGGAAT GCGGCCTATC
GATCTCAGCG ACTATCGGCA TGAGCTCGGA TCACTTATCG ACATATCCAA CTACCCGGAG
TTTCTTGAAT TGTCTGAGGA GTTACAAGAT CTCGTTCTGC ATCTGGTCGC AGCCCATCAT
GGCCGGGCTC GGCCCCACTT CCCGGAAAAG GAAACGTTTG ATTATGACCG GTCAGAAGAG
GCCGTAGCGG CTATCGTCAG TGAGGTCCCC CGCCGTTATG GCCGGTTGCA GCGGAAATAC
GGCCGGTGGG GGCTTGCCTA TCTTGAATCC TTGGTACGTG CTGCCGATGC CATGGCGTCA
CAATATGTCG CTGGTGAAGA CCCCGCTTAT GGCAATGCTG CGTTGTCCCT GGGAGGTGCC
CAATGA
|
|---|
| Protein sequence | MVERGITMST SEDFESNYKL LTGNSPFPWQ RKLFTMFVDK RFPETCPVPT GLGKTSIIAI
WLLAVAHHTR NGTVTEFPRR LVYVVNRRTV VDQATDEARK MLEALITKPE LCAVADVLSS
LATRADAAPL AISTLRGQFA DNAEWRDDPA RSAVIVGTVD MIGSRLLFSG YGCGFKSRPL
HAGFLGQDTL LVHDEAHLEP AFQELVSAIA SEQQRRRDFW QLRVMELTAT SRSDITDANT
LFTGEDRKHD VARKRLEAKK GISFHPVDDE KRVTEKVEQL TKGYKDSGQA ILVFLRGVKE
VMKVAAFLRK VVPDGVETLT GTLRGFERDT LARENAVFAR FMPHSEAIPQ QGTVYLVCTS
AGEVGVNISA DHLVCDLTPF ESMMQRFGRV NRFGDGNAHI DVVHRPFGKG SGFDESAPAA
LDDDPSAGAA SQDDLTADAA PKKKEKPLSP FDRACAQTLS VLKQLPLRED RRRDASPAAL
SEIPLADRQA AFTPPPVILP ISDILFDVWA LTSVRQKLPG RPPVADWLHG VTEWEPPATH
VAWRDEVYLV SGMLEICPPE DLLEDYPLKP HELLRDQTTR VFSELEKIAS RCPAKPVWLL
NADGKVDVLP LEKLVDRDKL RLADCTVLLP PAVGGLDGGM LNGDAAYDPK VVYDIADQWL
GENDRPRRCR LWDNEGPLSG MRLVRTIDVR PDAEEQEEES AESTIRRCWH WYVRPRSADD
DGSRTARVNQ ELTSHLRSAE DFAKKLVDRL GLGALEAKAV VLAARWHDLG KDRLIWQRSI
GNRDYPGLVL AKSGSGMRPI DLSDYRHELG SLIDISNYPE FLELSEELQD LVLHLVAAHH
GRARPHFPEK ETFDYDRSEE AVAAIVSEVP RRYGRLQRKY GRWGLAYLES LVRAADAMAS
QYVAGEDPAY GNAALSLGGA Q
|
|---|
| |