| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0017 |
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| Symbol | mfd |
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| ID | 2685756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | - |
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| Start bp | 25356 |
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| End bp | 28829 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637124679 |
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| Product | transcription-repair coupling factor |
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| Protein accession | NP_951079 |
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| Protein GI | 39995128 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0270668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAGA CCGATACCGA TCTCTTCAAA CGCCTCACCG ACCGCCTCAC CCCCCCTGCC
GCCCGGCTCA CCCTTGCCGG GCTCAGGGGG TCGTCGCCAG CCTATCTGCT GGCCCGGCTC
ATCGGGGAGG CGGGAGCTCC ATTCCTCGTG GTCGTCCCCG ACGCCGAAGC CGCCGCCGAG
CTCACCACGG AACTCCGGTT CTTCACGGGA AGACCCGGCG ACATCCTCCT GTTTCCCGCC
TGGGACACCT CGCCCTTTGA AAAGGCATCG CCCCATGCCG ACGTGACGGC CCAGCGGCTG
GCAGTCCTGC GCCGGCTGGC GGACCGCAGG GCGGCTGCCG TGGTAACCAC GCCGGAGGCT
CTGCGCCAAC GGGTAGTGCC GCGCTCCCTT CTGGACAGTG CCTCACTCTA CTTTCTGCCC
GGCGAAGAGA GCGACCGGGA CGATCTCCTG TCACGGCTGG TGACCCTCGG CTACCTCAAC
GTGCCGCTGG TGGAGGACCG GGGAACCTTT GCCGTGCGGG GCGGCATCGT CGACATCTTC
CCGCCGGGTT TCGATCTGCC GGTGCGGATC GAATTCTTCG GCGACTTCGT CGATACCATC
CGGAGCTTCG AACCGCTCTC CCAGCGCTCC CTCCAGCCCC TGGAAGAGTT ACTGCTGCTC
CCGTCGCGGG AGTTGCTCCT GACTGCCGAT ACCCTGCAGG GGGCGGCGTC CCGCATCAAG
ACGCGCTGCG ACGATCTGGA GATATCCCCC TTGGTCCGCC GCGAGCTGCT GGAACAGCTC
CAGAACGGCC TCTACCCGGC AGGAGTCGAA TGGCTCCTTC CCCTCTTTCA CCAGAATCTG
GAGACCCTGC TTGACTACGC CGGCGACGCC GTGCGGGTCC TGGTCGATCC GGCAGCCCAG
GAAGAGGAGG GAGAACGACT CTCGCGGGAA CTGGAGGAGG CTTCCGACCG CGCCCGGGAG
CGGGGCGAGC TCTTTCCCGC GCCGGAAAGC CTCTTCCTCG CCCCGGCGGA TACTGCGGCC
GCCCTGGCTG CGGGGAGACT GGTGACCATC CCCTTCCTGC ACCTGAACGA GGGTGATTCC
CCGGAGACCA TCGACATTGC CACCGAGACG AACGCCGACC TCAAGGTGGA CATCTCGCCC
GACAGCGAGG GGGTCCTGCG GCCGCTGGCC GCTCGCCTGA CCGGCTGGAT CGAGGAGCGG
CAACGGGTGA TCATAGCCTG CCACCAGCGC GGTCAGGCCC AGCGGCTGTA TGAGTTACTG
GCCCATTACC CGGTCCCCCT TACCGTCTCG GACCGCCCCT TCCCGGCGGA ACGGGAGCGG
GACGACGGCA GGGTGGACAT CGTAATCGGC GAAATCTCTC GCGGGTTCAG GTTGCCGGAA
GGACGGCTCG TGGTCATCGC CGAAGAGGAA ATCTTCGGCA AGCGGCAAAA ACGGCGCGGC
ATCACCGAGT TGCGCAAAAA GCAGATCATG ACCTCCCTGG CGGAGCTGAA GCCGGGCGAT
CACATGGTTC ACCTGGACCA CGGGGTCGGC ATTTACCGTG GACTCCAGCA CCTTTCGCTC
AGCGGCTGTG CCGGCGACTT CCTGCTGCTG GAGTATGCGG GGGGGGACAA GCTCTACCTG
CCGGTGGACC GGCTCAGCCT GGTGCAGCGC TACGTGGGCT CCGAGGGGAT CGAACCGCGG
GTCGACCGGC TCGGCGGCAC CTCATGGGAG AAGGCCAAGG GCAAGGCCCG CGCGGCAGTC
CAGGAGATGG CCGAAGAACT CTTGCGGATC TACGCGGCCC GCCAACTTCA CGAGGGGCAC
CGGTTTTCCC CCCCCGACGA TCTCTACCGG GAGTTCGAGG CCTCCTTCGC CTACGAGGAG
ACCTCCGACC AGCTGGCTGC CATCGAAGAC GTCATCGCCG ACATGACCAG CAACCGGCCC
ATGGACCGGC TGGTCTGCGG CGACGTGGGC TACGGCAAGA CCGAAGTGGC CATGCGGGGA
GCTTTCAAGG CGGTCATGGA CGGCAAGCAG GTGGCGGTCC TGGTGCCGAC CACAGTCCTG
GCCCAGCAGC ATTTGGAGAC CTTCAGGGCG CGGCTTGGGG CCTACCCGGT CACCATTGAA
ATGGTTTCCC GCTTCAGGAC TCCCAAGGAA CAGAAGGACA TCCTGGAGCG GGTGAAAAAG
GGGACCGTCG ATGTCATCAT CGGCACCCAC CGACTCCTTC AAAACGATGT GACGTTCAAG
GACCTGGGGC TTCTCATCGT GGACGAGGAG CAGCGCTTCG GGGTAACCCA CAAGGAAAAG
CTGAAAAAGT ACAAGGCAGC GGTGGACATC CTGACCCTCA CCGCCACCCC CATTCCCCGC
ACTCTCTACA TGTCGCTCAT GGGTATCCGC GACCTCTCCA TCATCGACAC CCCGCCCGTG
GATCGGCTGG CAGTTAAGAC CTTCGTGGCC CGTACCTCCG ACGAGCTCAT CCGCGAAGCG
GTTCTGCGGG AGCTCCGAAG GGGAGGGCAG GTGTTCTTCG TCCACAATCG GGTCCAGTCC
ATCGGAGCCT GGTACGAACA CCTGCGCCGC ATCGTGCCCG AGGCAAAGAT CGCCGTGGGG
CACGGCCAGA TGGACGAAGG CGAGCTGGAG AAGGTGATGC TTGGCTTCAT GCACGGGGAA
ACGAACCTTC TGCTCTGCAC CACGATCATC GAGTCAGGCC TGGACATCCC CAGTGCCAAC
ACCCTCATCG TGGACCGGGC TGACACCTTC GGACTGGCCC AGCTTTACCA GTTGCGGGGA
AGGGTAGGGC GCTCCCGGCA GCGGGCCTAC GCCTATCTCC TCATACCCGG CGAAGGCGCC
ATCTCGTCCG ATGCCCGGGA GCGGCTGCGG ATCATCCAAG AACTGAACGA GCTGGGGGCC
GGCTTCCGCC TGGCCACCCA CGACCTGGAG ATCAGGGGCG CCGGCGATCT CCTGGGGGCC
AAGCAGTCGG GCAACATTGC CGCCGTCGGC TTCGACCTCT ACACAGAACT CCTAGAAGAG
GCGGTCCAGA AACTCAAGGG CGAGGAGCCG GTAGAGCGGG TGGAGCCGGA GATCAACCTG
CGGGTGCCGG CCTTCATCCC CGAGGACTAT GTGCGCGAAC CGAATCAGCG CCTCGTCATC
TACAAGAAGC TGACCCAGGC CACGGCCGAA GAGGAGGTGG GCGAGGTCAT GGAAGAACTG
GTGGACCGGT TCGGCACGCT GCCGCTGGCG GCCTCCTACC TGCTGGACGT GATGAAGCTG
CGGATCATGC TCAAGCACTT CCTGGTCCGG ATGGCGGAGT TTGACGGCAA ACGGCTCTGT
CTCTCATTTC ACGAGAAAAC TCCGGTTTCG CCCGACACCA TTATCGGTCT CATTAAAGCA
AACCCAAAAC GGTACCAGTT CACCCCGGAC TTCCGTCTCG TGGCGGAACT GGCCGACACC
AGCTTCGAGG GGGTCCTGGC CGAAGCCAGA AATCTCTTGA AAAGGCTGGG GTGA
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| Protein sequence | MTQTDTDLFK RLTDRLTPPA ARLTLAGLRG SSPAYLLARL IGEAGAPFLV VVPDAEAAAE
LTTELRFFTG RPGDILLFPA WDTSPFEKAS PHADVTAQRL AVLRRLADRR AAAVVTTPEA
LRQRVVPRSL LDSASLYFLP GEESDRDDLL SRLVTLGYLN VPLVEDRGTF AVRGGIVDIF
PPGFDLPVRI EFFGDFVDTI RSFEPLSQRS LQPLEELLLL PSRELLLTAD TLQGAASRIK
TRCDDLEISP LVRRELLEQL QNGLYPAGVE WLLPLFHQNL ETLLDYAGDA VRVLVDPAAQ
EEEGERLSRE LEEASDRARE RGELFPAPES LFLAPADTAA ALAAGRLVTI PFLHLNEGDS
PETIDIATET NADLKVDISP DSEGVLRPLA ARLTGWIEER QRVIIACHQR GQAQRLYELL
AHYPVPLTVS DRPFPAERER DDGRVDIVIG EISRGFRLPE GRLVVIAEEE IFGKRQKRRG
ITELRKKQIM TSLAELKPGD HMVHLDHGVG IYRGLQHLSL SGCAGDFLLL EYAGGDKLYL
PVDRLSLVQR YVGSEGIEPR VDRLGGTSWE KAKGKARAAV QEMAEELLRI YAARQLHEGH
RFSPPDDLYR EFEASFAYEE TSDQLAAIED VIADMTSNRP MDRLVCGDVG YGKTEVAMRG
AFKAVMDGKQ VAVLVPTTVL AQQHLETFRA RLGAYPVTIE MVSRFRTPKE QKDILERVKK
GTVDVIIGTH RLLQNDVTFK DLGLLIVDEE QRFGVTHKEK LKKYKAAVDI LTLTATPIPR
TLYMSLMGIR DLSIIDTPPV DRLAVKTFVA RTSDELIREA VLRELRRGGQ VFFVHNRVQS
IGAWYEHLRR IVPEAKIAVG HGQMDEGELE KVMLGFMHGE TNLLLCTTII ESGLDIPSAN
TLIVDRADTF GLAQLYQLRG RVGRSRQRAY AYLLIPGEGA ISSDARERLR IIQELNELGA
GFRLATHDLE IRGAGDLLGA KQSGNIAAVG FDLYTELLEE AVQKLKGEEP VERVEPEINL
RVPAFIPEDY VREPNQRLVI YKKLTQATAE EEVGEVMEEL VDRFGTLPLA ASYLLDVMKL
RIMLKHFLVR MAEFDGKRLC LSFHEKTPVS PDTIIGLIKA NPKRYQFTPD FRLVAELADT
SFEGVLAEAR NLLKRLG
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