Gene DET1190 details

Gene Information

• Locus tag: DET1190
• Symbol: ribD
• ID: 3229533
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: -
• Start bp: 1085455
• End bp: 1086552
• Gene Length: 1098 bp
• Protein Length: 365 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637120753
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_181903
• Protein GI: 57234067
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATATA TGTCTCAGGC TTTGTCGCTT GCCAAGCTGG CTATAGGTCA GGTCAGTCCT 
AACCCGGCGG TGGGGGCTGT CATTGTAAAA AACGGCGAAG TGGTCGGTCA GGGCTTTACC 
CAGCCGCCCG GCGGTGACCA CGCTGAGATA GTAGCTTTGA AGCAGGCTGC CGAAAAGGCC 
AAAGGGGCTG CTTTATATGT GACTTTAGAG CCGTGCTGCC ACCAGGGGCG GACCCCGCCC 
TGCACTGTGG CTATTATAGA ATCAGGCATC AAAGAGGTTT ATATTGCCAC CCTGGATGAT 
AATCCCTTAG TTTCCGGCAA GGGCAAGAAA GAGCTGGAAG ATGCCGGTAT AAAGGTTCAT 
CTGGGCATGA TGGAGCGTGA AGCCCGCCAG ATGAATGAAG CCTATTTCAA GTATATTACC 
ACCGGCATGC CCTTTGTGAC TGCCAAATAC GCCATGAGCC TTGACGGCAA AACGGGTACC 
CGCACCGGTG ATTCCAAGTG GATTTCCAAC GAGGAATCCC GTCATTTTGC CCATTATATC 
CGCCATATAT CAGATGTGAT TATGGCCGGG CTTAATACTA TCCTCAAAGA TGACCCCCAC 
CTGACAGCCA GAGTAAACTG CGGGCGGGGC GGTACTTCAC ATTGCCAGCC CACCAGAGTA 
ATTATTGATG ATAACGGCCG GGCACCTTTG AGTTCCAACG TTTTTCATGT TCCCGGCAAT 
ACCATTGTAG CTGTAGCCAA AGGGCTTACC CCCGAAGAGA AACAGGCGTA TGATGAGGTC 
GGGGCAAAAG TGGTGGAAAT GCCGGATGAA CGGGGGCTGG TAGACTTAAA ATCCCTGCTG 
CGTTATCTGG GGCAAAACGG GGTAACCAGT GTGCTGGTAG AGGGCGGCGG CATTGTGCTG 
GGTTCGCTTT TTGACCTTAA ACTGGTGGAC AAGGTTTTGG TATTTGTCGC CCCCATAATA 
ATAGGCGGCA AGGACGCTAA AATACCGGTT GCGGGTTTGG GGGCGGAGCT GATTACAGAC 
TCAGCCAAGC TTCGGGATAT TACCACTACC GCATTCGGAC AGGACGTGTT GATTTCCGGT 
TACGTTATTA AGGAGTAA 

 

Protein sequence

MKYMSQALSL AKLAIGQVSP NPAVGAVIVK NGEVVGQGFT QPPGGDHAEI VALKQAAEKA 
KGAALYVTLE PCCHQGRTPP CTVAIIESGI KEVYIATLDD NPLVSGKGKK ELEDAGIKVH 
LGMMEREARQ MNEAYFKYIT TGMPFVTAKY AMSLDGKTGT RTGDSKWISN EESRHFAHYI 
RHISDVIMAG LNTILKDDPH LTARVNCGRG GTSHCQPTRV IIDDNGRAPL SSNVFHVPGN 
TIVAVAKGLT PEEKQAYDEV GAKVVEMPDE RGLVDLKSLL RYLGQNGVTS VLVEGGGIVL 
GSLFDLKLVD KVLVFVAPII IGGKDAKIPV AGLGAELITD SAKLRDITTT AFGQDVLISG 
YVIKE