Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0596 |
Symbol | ligA |
ID | 3230074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | - |
Start bp | 545122 |
End bp | 547155 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637120161 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_181338 |
Protein GI | 57234606 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTCCC CCCGAACGGA AATAGAAAAC CTGAGGCGCG AGATAAACCG CCATAACCAG CTGTATTACG TTCAGGACAA CCCTGAAATA TCTGATTCCG AGTATGACGC CTTGCTCCGC CGCTTAAAAG AGCTGGAGGA AGCCCACCCT GAGCTTGTTA CGGCGGACTC CCCCACCCAA AGAGTGGGGG CTGAGCCGCT AAAGGCCTTC GGCATTGTCA ATCACCCTTA TCCGCTGCTT TCTCTGGCAA ATGCCTTTTC AGATACGGAA CTGGAAGCCT GGTACCTGCG GGTAAAGAAA CTGCTGGGGA ATGCCGCTTT TCAGATAGAC TGCGAACCCA AAATGGACGG GCTGGCAGTT GCACTTACCT ACCGAAACGG CAAGTTTACC ACCGGCGCTA CCCGGGGTGA CGGCTTTCAG GGTGAAAATA TCACCCGAAA CCTGAGAACT ATCCATTCTA TACCCTTAAA TACCGAGGAG GACGCCCCCC CTGTTTTTGA AATAAGGGGT GAAGTGTATC TTCCAAAAGA AGGCTTCGCC AAGCTCAACC GCGAAAGGGC TGATAAAGGG CTATCCCTTT TTGCCAACCC CCGCAATGCC GCCGCCGGTT CGCTCCGCCA GCTTGACCCG TCAGTAACGG CCGAAAGACC GCTGGATATA TTTATTTATG CTCTGGGGTA TGCGGAAGAC AGCCTGCTGC CTGACAGCCA CTGGCAGATA CTGGAATATT TCAGCCGCCT GGGTTTTAAG ATAAACCCGC GTAACCGTCT GGTAAACACC CTGGAAGAAG CCAAAGAATA CTACCGTGAG ATGGCGGAAA ACCGGGATTC CCTGCCCTAC GAAGCAGACG GGGTAGTCTT CAAGGTAGAT TCCGTATCCC TGCAGCAAAA ACTGGGGGAT GCGGGACGTG AACCCCGCTG GGCTATCGCC TATAAATTTC CGGCCGAACA GGTCACTACC CTCCTTAGGA AAATAGGCAT ATCGGTAGGC CGTACCGGCA CTTTAAACCC GTATGCTATC CTTGAACCGG TAAATGTAGG CGGGGTAGTG GTAAAACAGG CCAGTTTGCA TAACGAAGAT GATATCCTCC GCAAGGATAT CCGTGAAGGG GATACGGTAG TAATCCAGCG GGCGGGGGAA GTAATACCAG AGGTAGTTGC CCCGGTGCTG GCTAAACGCA GCCCCGAATC AAAACCCTTC AGCATGGAGG AAACCCTGTT TAACCCCAAA CTTAGCCGCC CGGCCTGCCC GGTGTGCGGA GGGGAAATAT ACCGCCCCGC AGGCGAGGCT ATGCACTACT GTGCCAACGT TTCCTGCCCC GCCCAGTTTG AACGCCAGCT GGAACACTTT GTTTCCAGAG GGACTATGGA TATCCGCGGC ATCGGCGAAA GCCTGAGCGT GATACTGGCA CAAGAGGGAC TAGTCAAAAA CGTATCTGAC CTTTACTACC TGACTGCGGC TGATTTACTG AAACTGCCGC GCATGGGTGA AAAAAGTGCG GATAATATAA TAAAAGCTAT CGCAGACAGC AAAAGCCGCC CGCTGGACAG GGTAATATTC GGGCTGGGTA TCCGCCACGT GGGAAATGAG ACAGCCGCTT TGCTATCCAG CCGCTACGGT GATATATGGG CACTGGCGGG GGCAGGGCTT GATGAACTGC AAACTATACC GGATATAGGT GCCAAGATAG CCAGCAGCAT AAAAGCCTAT TTCAGCGAAG AAAAAAACAT AGCGGTCATC CGCCGTTTGG AAACAGCCGG AGTAAAGCTT GCTTCAGACC AAAAGCCCTC ATACAAACCT CTGCCGCTTT CCGGAGTGGA GTTTGTAGTT ACCGGCAAAC TGGATAGTTT AAGCCGCGAA GAAGCACAGC AAAAAATCCG CTCACTTGGC GGCACGGCCA AGGACAATGT TACCAAAGCA ACCCGCTATC TGGTGGTAGG TGCTGATGCC GGCTCCAAGC TGGCCAAAGC CCGCAGTATG GGGGTAAAAG AGCTGTCCGA ACAGGAATTT ATAAATATGC TGGAGCAATC TTGA
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Protein sequence | MFSPRTEIEN LRREINRHNQ LYYVQDNPEI SDSEYDALLR RLKELEEAHP ELVTADSPTQ RVGAEPLKAF GIVNHPYPLL SLANAFSDTE LEAWYLRVKK LLGNAAFQID CEPKMDGLAV ALTYRNGKFT TGATRGDGFQ GENITRNLRT IHSIPLNTEE DAPPVFEIRG EVYLPKEGFA KLNRERADKG LSLFANPRNA AAGSLRQLDP SVTAERPLDI FIYALGYAED SLLPDSHWQI LEYFSRLGFK INPRNRLVNT LEEAKEYYRE MAENRDSLPY EADGVVFKVD SVSLQQKLGD AGREPRWAIA YKFPAEQVTT LLRKIGISVG RTGTLNPYAI LEPVNVGGVV VKQASLHNED DILRKDIREG DTVVIQRAGE VIPEVVAPVL AKRSPESKPF SMEETLFNPK LSRPACPVCG GEIYRPAGEA MHYCANVSCP AQFERQLEHF VSRGTMDIRG IGESLSVILA QEGLVKNVSD LYYLTAADLL KLPRMGEKSA DNIIKAIADS KSRPLDRVIF GLGIRHVGNE TAALLSSRYG DIWALAGAGL DELQTIPDIG AKIASSIKAY FSEEKNIAVI RRLETAGVKL ASDQKPSYKP LPLSGVEFVV TGKLDSLSRE EAQQKIRSLG GTAKDNVTKA TRYLVVGADA GSKLAKARSM GVKELSEQEF INMLEQS
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