Gene DET0596 details

Gene Information

• Locus tag: DET0596
• Symbol: ligA
• ID: 3230074
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: -
• Start bp: 545122
• End bp: 547155
• Gene Length: 2034 bp
• Protein Length: 677 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637120161
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_181338
• Protein GI: 57234606
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTCCC CCCGAACGGA AATAGAAAAC CTGAGGCGCG AGATAAACCG CCATAACCAG 
CTGTATTACG TTCAGGACAA CCCTGAAATA TCTGATTCCG AGTATGACGC CTTGCTCCGC 
CGCTTAAAAG AGCTGGAGGA AGCCCACCCT GAGCTTGTTA CGGCGGACTC CCCCACCCAA 
AGAGTGGGGG CTGAGCCGCT AAAGGCCTTC GGCATTGTCA ATCACCCTTA TCCGCTGCTT 
TCTCTGGCAA ATGCCTTTTC AGATACGGAA CTGGAAGCCT GGTACCTGCG GGTAAAGAAA 
CTGCTGGGGA ATGCCGCTTT TCAGATAGAC TGCGAACCCA AAATGGACGG GCTGGCAGTT 
GCACTTACCT ACCGAAACGG CAAGTTTACC ACCGGCGCTA CCCGGGGTGA CGGCTTTCAG 
GGTGAAAATA TCACCCGAAA CCTGAGAACT ATCCATTCTA TACCCTTAAA TACCGAGGAG 
GACGCCCCCC CTGTTTTTGA AATAAGGGGT GAAGTGTATC TTCCAAAAGA AGGCTTCGCC 
AAGCTCAACC GCGAAAGGGC TGATAAAGGG CTATCCCTTT TTGCCAACCC CCGCAATGCC 
GCCGCCGGTT CGCTCCGCCA GCTTGACCCG TCAGTAACGG CCGAAAGACC GCTGGATATA 
TTTATTTATG CTCTGGGGTA TGCGGAAGAC AGCCTGCTGC CTGACAGCCA CTGGCAGATA 
CTGGAATATT TCAGCCGCCT GGGTTTTAAG ATAAACCCGC GTAACCGTCT GGTAAACACC 
CTGGAAGAAG CCAAAGAATA CTACCGTGAG ATGGCGGAAA ACCGGGATTC CCTGCCCTAC 
GAAGCAGACG GGGTAGTCTT CAAGGTAGAT TCCGTATCCC TGCAGCAAAA ACTGGGGGAT 
GCGGGACGTG AACCCCGCTG GGCTATCGCC TATAAATTTC CGGCCGAACA GGTCACTACC 
CTCCTTAGGA AAATAGGCAT ATCGGTAGGC CGTACCGGCA CTTTAAACCC GTATGCTATC 
CTTGAACCGG TAAATGTAGG CGGGGTAGTG GTAAAACAGG CCAGTTTGCA TAACGAAGAT 
GATATCCTCC GCAAGGATAT CCGTGAAGGG GATACGGTAG TAATCCAGCG GGCGGGGGAA 
GTAATACCAG AGGTAGTTGC CCCGGTGCTG GCTAAACGCA GCCCCGAATC AAAACCCTTC 
AGCATGGAGG AAACCCTGTT TAACCCCAAA CTTAGCCGCC CGGCCTGCCC GGTGTGCGGA 
GGGGAAATAT ACCGCCCCGC AGGCGAGGCT ATGCACTACT GTGCCAACGT TTCCTGCCCC 
GCCCAGTTTG AACGCCAGCT GGAACACTTT GTTTCCAGAG GGACTATGGA TATCCGCGGC 
ATCGGCGAAA GCCTGAGCGT GATACTGGCA CAAGAGGGAC TAGTCAAAAA CGTATCTGAC 
CTTTACTACC TGACTGCGGC TGATTTACTG AAACTGCCGC GCATGGGTGA AAAAAGTGCG 
GATAATATAA TAAAAGCTAT CGCAGACAGC AAAAGCCGCC CGCTGGACAG GGTAATATTC 
GGGCTGGGTA TCCGCCACGT GGGAAATGAG ACAGCCGCTT TGCTATCCAG CCGCTACGGT 
GATATATGGG CACTGGCGGG GGCAGGGCTT GATGAACTGC AAACTATACC GGATATAGGT 
GCCAAGATAG CCAGCAGCAT AAAAGCCTAT TTCAGCGAAG AAAAAAACAT AGCGGTCATC 
CGCCGTTTGG AAACAGCCGG AGTAAAGCTT GCTTCAGACC AAAAGCCCTC ATACAAACCT 
CTGCCGCTTT CCGGAGTGGA GTTTGTAGTT ACCGGCAAAC TGGATAGTTT AAGCCGCGAA 
GAAGCACAGC AAAAAATCCG CTCACTTGGC GGCACGGCCA AGGACAATGT TACCAAAGCA 
ACCCGCTATC TGGTGGTAGG TGCTGATGCC GGCTCCAAGC TGGCCAAAGC CCGCAGTATG 
GGGGTAAAAG AGCTGTCCGA ACAGGAATTT ATAAATATGC TGGAGCAATC TTGA 

 

Protein sequence

MFSPRTEIEN LRREINRHNQ LYYVQDNPEI SDSEYDALLR RLKELEEAHP ELVTADSPTQ 
RVGAEPLKAF GIVNHPYPLL SLANAFSDTE LEAWYLRVKK LLGNAAFQID CEPKMDGLAV 
ALTYRNGKFT TGATRGDGFQ GENITRNLRT IHSIPLNTEE DAPPVFEIRG EVYLPKEGFA 
KLNRERADKG LSLFANPRNA AAGSLRQLDP SVTAERPLDI FIYALGYAED SLLPDSHWQI 
LEYFSRLGFK INPRNRLVNT LEEAKEYYRE MAENRDSLPY EADGVVFKVD SVSLQQKLGD 
AGREPRWAIA YKFPAEQVTT LLRKIGISVG RTGTLNPYAI LEPVNVGGVV VKQASLHNED 
DILRKDIREG DTVVIQRAGE VIPEVVAPVL AKRSPESKPF SMEETLFNPK LSRPACPVCG 
GEIYRPAGEA MHYCANVSCP AQFERQLEHF VSRGTMDIRG IGESLSVILA QEGLVKNVSD 
LYYLTAADLL KLPRMGEKSA DNIIKAIADS KSRPLDRVIF GLGIRHVGNE TAALLSSRYG 
DIWALAGAGL DELQTIPDIG AKIASSIKAY FSEEKNIAVI RRLETAGVKL ASDQKPSYKP 
LPLSGVEFVV TGKLDSLSRE EAQQKIRSLG GTAKDNVTKA TRYLVVGADA GSKLAKARSM 
GVKELSEQEF INMLEQS